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通过将缬氨酸68(E11)替换为天冬酰胺来稳定肌红蛋白中结合的氧气。

Stabilizing bound O2 in myoglobin by valine68 (E11) to asparagine substitution.

作者信息

Krzywda S, Murshudov G N, Brzozowski A M, Jaskolski M, Scott E E, Klizas S A, Gibson Q H, Olson J S, Wilkinson A J

机构信息

Department of Chemistry, University of York, UK.

出版信息

Biochemistry. 1998 Nov 10;37(45):15896-907. doi: 10.1021/bi9812470.

Abstract

The isopropyl side chain of valine68 in myoglobin has been replaced by the acetamide side chain of asparagine in an attempt to engineer higher oxygen affinity. The asparagine replacement introduces a second hydrogen bond donor group into the distal heme pocket which could further stabilize bound oxygen. The Val68 to Asn substitution leads to approximately 3-fold increases in oxygen affinity and 4-6-fold decreases in CO affinity. As a result, the M-value (KCO/KO2) is lowered 15-20-fold to a value close to unity. An even larger enhancement of O2 affinity is seen when asparagine68 is inserted into H64L sperm whale myoglobin which lacks a distal histidine. The overall rate constants for oxygen and carbon monoxide binding to the single V68N myoglobin mutants are uniformly lower than those for the wild-type protein. In contrast, the overall rate constant for NO association is unchanged. Analyses of time courses monitoring the geminate recombination of ligands following nanosecond and picosecond flash photolysis of MbNO and MbO2 indicate that the barrier to ligand binding from within the heme pocket has been raised with little effect on the barrier to diffusion of the ligand into the pocket from the solvent. The crystal structures of the aquomet, deoxy, oxy, and carbon monoxy forms of the V68N mutant have been determined to resolutions ranging from 1.75 to 2.2 A at 150 K. The overall structures are very similar to those of the wild-type protein with the principal alterations taking place within and around the distal heme pocket. In all four structures the asparagine68 side chain lies almost parallel to the plane of the heme with its amide group directed toward the back of the distal heme pocket. The coordinated water molecule in the aquomet form and the bound oxygen in the oxy form can form hydrogen-bonding interactions with both the Asn68 amide group and the imidazole side chain of His64. Surprisingly, in the carbon monoxy form of the V68N mutant, the histidine64 side chain has swung completely out the distal pocket, its place being taken by two ordered water molecules. Overall, these functional and structural results show that the asparagine68 side chain (i) forms a strong hydrogen bond with bound oxygen through its -NH2 group but (ii) sterically hinders the approach of ligands to the iron from within the distal heme pocket.

摘要

为了构建更高的氧亲和力,肌红蛋白中缬氨酸68的异丙基侧链已被天冬酰胺的乙酰胺侧链取代。天冬酰胺取代在远侧血红素口袋中引入了第二个氢键供体基团,这可以进一步稳定结合的氧。缬氨酸68到天冬酰胺的取代导致氧亲和力增加约3倍,一氧化碳亲和力降低4 - 6倍。结果,M值(KCO/KO2)降低15 - 20倍,接近1。当将天冬酰胺68插入缺乏远侧组氨酸的H64L抹香鲸肌红蛋白中时,观察到氧亲和力有更大增强。单个V68N肌红蛋白突变体与氧和一氧化碳结合的总速率常数均低于野生型蛋白。相反,一氧化氮缔合的总速率常数不变。对MbNO和MbO2进行纳秒和皮秒闪光光解后监测配体双分子复合的时间进程分析表明,血红素口袋内配体结合的屏障升高,而对配体从溶剂扩散到口袋中的屏障影响很小。已确定V68N突变体的水合高铁、脱氧、氧合和一氧化碳氧合形式的晶体结构在150 K下分辨率范围为1.75至2.2 Å。总体结构与野生型蛋白非常相似,主要变化发生在远侧血红素口袋内及其周围。在所有四种结构中,天冬酰胺68侧链几乎与血红素平面平行,其酰胺基团指向远侧血红素口袋的后部。水合高铁形式中的配位水分子和氧合形式中的结合氧可以与天冬酰胺68酰胺基团和组氨酸64的咪唑侧链形成氢键相互作用。令人惊讶的是,在V68N突变体的一氧化碳氧合形式中,组氨酸64侧链已完全摆动出远侧口袋,其位置被两个有序水分子占据。总体而言,这些功能和结构结果表明,天冬酰胺68侧链(i)通过其 -NH2基团与结合的氧形成强氢键,但(ii)在空间上阻碍配体从远侧血红素口袋内接近铁。

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