Complexes containing both polarity strands of avocado sunblotch viroid: identification in chloroplasts and characterization.

RNA analysis by nondenaturing polyacrylamide gel electrophoresis and Northern blot hybridization of avocado chloroplasts purified from protoplasts of leaves infected by avocado sunblotch viroid (ASBVd) revealed the main ASBVd-specific bands found previously in preparations of total leaf RNA: the monomeric, dimeric and subgenomic RNAs, and two bands, x and y. After RNase treatment in high ionic strength, bands x and y remained resistant, indicating a high content of double-stranded RNAs, whereas the other viroid-specific and cellular RNAs were degraded. Analysis by denaturing polyacrylamide gel electrophoresis and Northern blot hybridization showed that the major constituents of the purified y and x bands were the monomeric circular and linear ASBVd forms of both polarities, but band y contained additionally multimeric ASBVd RNAs, also of both polarities, that probably cause its slower migration in nondenaturing gels. After RNase treatment, the composition of band y was essentially unaffected, but only the monomeric linear ASBVd RNAs of both polarities was recovered from band x. However, in the presence of higher RNase concentrations, band y was converted into band x, indicating that they are closely related. The structure of complexes x and y, containing minus ASBVd strands and particularly the monomeric circular form, supports a role of replicative intermediates in the symmetric rolling circle mechanism proposed for ASBVd, whereas their localization in the chloroplast is strong evidence in favor of this organelle as the replication site of ASBVd.