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BEAUTY-X:增强型BLAST搜索DNA查询。

BEAUTY-X: enhanced BLAST searches for DNA queries.

作者信息

Worley K C, Culpepper P, Wiese B A, Smith R F

机构信息

Human Genome Center, Department of Molecular and Human Genetics, Baylor College of Medicine, N-1519.08, One Baylor Plaza, Houston, TX 77030, USA. kworley,

出版信息

Bioinformatics. 1998;14(10):890-1. doi: 10.1093/bioinformatics/14.10.890.

Abstract

UNLABELLED

BEAUTY (BLAST Enhanced Alignment Utility) is an enhanced version of the BLAST database search tool that facilitates identification of the functions of matched sequences. Three recent improvements to the BEAUTY program described here make the enhanced output (1) available for DNA queries, (2) available for searches of any protein database, and (3) more up-to-date, with periodic updates of the domain information.

AVAILABILITY

BEAUTY searches of the NCBI and EMBL non-redundant protein sequence databases are available from the BCM Search Launcher Web pages (http://gc.bcm.tmc. edu:8088/search-launcher/launcher.html). BEAUTY Post-Processing of submitted search results is available using the BCM Search Launcher Batch Client (version 2.6) (ftp://gc.bcm.tmc. edu/pub/software/search-launcher/).

SUPPLEMENTARY INFORMATION

Example figures are available at http://dot.bcm.tmc. edu:9331/papers/beautypp.html

CONTACT

(kworley,culpep)@bcm.tmc.edu

摘要

未标注

BEAUTY(BLAST增强比对工具)是BLAST数据库搜索工具的增强版本,有助于识别匹配序列的功能。本文介绍的BEAUTY程序最近的三项改进使增强输出能够:(1)用于DNA查询;(2)用于搜索任何蛋白质数据库;(3)更具时效性,会定期更新结构域信息。

可用性

可通过BCM搜索启动器网页(http://gc.bcm.tmc.edu:8088/search-launcher/launcher.html)对NCBI和EMBL非冗余蛋白质序列数据库进行BEAUTY搜索。可使用BCM搜索启动器批处理客户端(版本2.6)(ftp://gc.bcm.tmc.edu/pub/software/search-launcher/)对提交的搜索结果进行BEAUTY后处理。

补充信息

示例图可在http://dot.bcm.tmc.edu:9331/papers/beautypp.html获取。

联系方式

(kworley,culpep)@bcm.tmc.edu

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