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[基因库的选择性结构。III. 使用数值重抽样从F(ST)统计量进行测定的技术]

[Selective structure of the gene pool. III. Technology of determination from F(ST)-statistics using numerical resampling].

作者信息

Balanovskaia E V, Nurbaev S D

机构信息

Institute of Clinical Genetics, Russian Academy of Medical Sciences, Moscow, Russia.

出版信息

Genetika. 1998 Oct;34(10):1434-46.

PMID:9929832
Abstract

The selection pressure on the ith gene was determined on the basis of the heterogeneity of interpopulation diversity FST(i), assumpting that the significant deviation of FST(i) (observed differentiation of the ith gene) from Fe (selectively neutral differentiation) indicates selection. A selectively neutral variation Fe was estimated from the mean FST, averaged over the total set of genes. Since the validity of the equation FST approximately Fe = (4NeMe + 1)-1 depends on the fulfillment of conditions of the theoretical model as well as on organization of sampling of genes and subpopulations rather than on statistical parameters of the gene sample, an additional correction by boot-strapping is suggested. Simulation of sampling of the gene pool using numerical resampling (10(6) samples from each of the 50 markers) allowed us to characterize the selective structure of the gene pool. This structure consists of the following: one class of selectively neutral genes, NEUTRAL (FST(i) approximately Fe); and two classes of selective genes, LOWER DIFF (FST(i) < Fe) and SUPER DIFF (FST(i) > Fe). Interclass regions N-LOWER and N-SUPER between the classes of neutral and selective genes were defined with the use of bootstrapping. The hypothesis on the presence or absence of selection cannot be formulated with regard to the genes included in the interclass regions. A general trend for all gene pools of the world was revealed: the ratio between the boundary values of selective classes and Fe is constant. On the basis of this, a rapid and simple technique for estimating selective values of genes was developed. The positions of more than 80 immunobiochemical gene markers in the selective structure of six gene pools of the world (Europe, Asia, Africa, Australia, America, and northeastern Eurasia) are presented. The selective structure of five subregions of northeastern Eurasia (Caucasus, Europe, Ural, Siberia, and Central Asia) are characterized as well.

摘要

基于群体间多样性FST(i)的异质性来确定第i个基因上的选择压力,假设FST(i)(第i个基因的观察到的分化)与Fe(选择性中性分化)的显著偏差表明存在选择。从所有基因的平均FST估计选择性中性变异Fe。由于方程FST≈Fe = (4NeMe + 1)-1的有效性取决于理论模型条件的满足情况以及基因和亚群体的抽样组织,而非基因样本的统计参数,因此建议通过自展法进行额外校正。使用数值重采样(从50个标记中的每一个进行10(6)次采样)对基因库采样进行模拟,使我们能够表征基因库的选择结构。该结构包括以下部分:一类选择性中性基因,NEUTRAL(FST(i)≈Fe);以及两类选择性基因,LOWER DIFF(FST(i)<Fe)和SUPER DIFF(FST(i)>Fe)。中性和选择性基因类别之间的类间区域N-LOWER和N-SUPER是通过自展法定义的。关于类间区域中包含的基因,无法提出关于选择存在与否的假设。揭示了世界上所有基因库的一个普遍趋势:选择性类别的边界值与Fe之间的比率是恒定的。基于此,开发了一种快速简单的估计基因选择值的技术。展示了世界六个基因库(欧洲、亚洲、非洲、澳大利亚、美洲和欧亚大陆东北部)的选择结构中80多个免疫生化基因标记的位置。还对欧亚大陆东北部五个次区域(高加索、欧洲、乌拉尔、西伯利亚和中亚)的选择结构进行了表征。

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