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在酿酒酵母剪接体U小核RNA(snRNA)中进行假尿苷定位揭示,假尿苷合酶pus1p对U2 snRNA和tRNA表现出双重底物特异性。

Pseudouridine mapping in the Saccharomyces cerevisiae spliceosomal U small nuclear RNAs (snRNAs) reveals that pseudouridine synthase pus1p exhibits a dual substrate specificity for U2 snRNA and tRNA.

作者信息

Massenet S, Motorin Y, Lafontaine D L, Hurt E C, Grosjean H, Branlant C

机构信息

Laboratoire de Maturation des ARN et Enzymologie Moléculaire, UMR7567 CNRS-UHP, Faculté des Sciences, 54506 Vandoeuvre-les-Nancy Cédex, France.

出版信息

Mol Cell Biol. 1999 Mar;19(3):2142-54. doi: 10.1128/MCB.19.3.2142.

DOI:10.1128/MCB.19.3.2142
PMID:10022901
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC84007/
Abstract

Pseudouridine (Psi) residues were localized in the Saccharomyces cerevisiae spliceosomal U small nuclear RNAs (UsnRNAs) by using the chemical mapping method. In contrast to vertebrate UsnRNAs, S. cerevisiae UsnRNAs contain only a few Psi residues, which are located in segments involved in intermolecular RNA-RNA or RNA-protein interactions. At these positions, UsnRNAs are universally modified. When yeast mutants disrupted for one of the several pseudouridine synthase genes (PUS1, PUS2, PUS3, and PUS4) or depleted in rRNA-pseudouridine synthase Cbf5p were tested for UsnRNA Psi content, only the loss of the Pus1p activity was found to affect Psi formation in spliceosomal UsnRNAs. Indeed, Psi44 formation in U2 snRNA was abolished. By using purified Pus1p enzyme and in vitro-produced U2 snRNA, Pus1p is shown here to catalyze Psi44 formation in the S. cerevisiae U2 snRNA. Thus, Pus1p is the first UsnRNA pseudouridine synthase characterized so far which exhibits a dual substrate specificity, acting on both tRNAs and U2 snRNA. As depletion of rRNA-pseudouridine synthase Cbf5p had no effect on UsnRNA Psi content, formation of Psi residues in S. cerevisiae UsnRNAs is not dependent on the Cbf5p-snoRNA guided mechanism.

摘要

通过化学图谱法确定了酿酒酵母剪接体U小核RNA(UsnRNAs)中的假尿苷(Ψ)残基的位置。与脊椎动物的UsnRNAs不同,酿酒酵母的UsnRNAs只含有少数Ψ残基,它们位于参与分子间RNA-RNA或RNA-蛋白质相互作用的片段中。在这些位置,UsnRNAs普遍发生修饰。当检测破坏了几个假尿苷合酶基因(PUS1、PUS2、PUS3和PUS4)之一或rRNA-假尿苷合酶Cbf5p缺失的酵母突变体的UsnRNA Ψ含量时,发现只有Pus1p活性的丧失会影响剪接体UsnRNAs中Ψ的形成。事实上,U2 snRNA中Ψ44的形成被消除了。通过使用纯化的Pus1p酶和体外产生的U2 snRNA,本文证明Pus1p能催化酿酒酵母U2 snRNA中Ψ44的形成。因此,Pus1p是迄今为止鉴定出的首个具有双重底物特异性的UsnRNA假尿苷合酶,它既能作用于tRNA,也能作用于U2 snRNA。由于rRNA-假尿苷合酶Cbf5p的缺失对UsnRNA Ψ含量没有影响,酿酒酵母UsnRNAs中Ψ残基的形成不依赖于Cbf5p-snoRNA引导机制。

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本文引用的文献

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Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing.U2小核仁核糖核酸(snRNA)的修饰对于小核核糖核蛋白(snRNP)组装和前体信使核糖核酸(pre-mRNA)剪接是必需的。
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The yeast tRNA:pseudouridine synthase Pus1p displays a multisite substrate specificity.酵母tRNA:假尿苷合酶Pus1p表现出多位点底物特异性。
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The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase.盒H + ACA小核仁RNA携带Cbf5p,即假定的核糖体RNA假尿苷合酶。
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Sequence and structural elements of methylation guide snoRNAs essential for site-specific ribose methylation of pre-rRNA.对于前体rRNA的位点特异性核糖甲基化至关重要的甲基化指导snoRNA的序列和结构元件。
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Characterization of yeast protein Deg1 as pseudouridine synthase (Pus3) catalyzing the formation of psi 38 and psi 39 in tRNA anticodon loop.酵母蛋白Deg1作为假尿苷合酶(Pus3)的特性,该酶催化tRNA反密码子环中ψ38和ψ39的形成。
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Functional analysis of the U5 snRNA loop 1 in the second catalytic step of yeast pre-mRNA splicing.酵母前体mRNA剪接第二步反应中U5小核仁RNA环1的功能分析
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Compilation of tRNA sequences and sequences of tRNA genes.转运RNA序列及转运RNA基因序列的汇编。
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Modification of human U4 RNA requires U6 RNA and multiple pseudouridine synthases.人类U4 RNA的修饰需要U6 RNA和多种假尿苷合成酶。
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9
The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of psi55 in both mitochondrial and cytoplasmic tRNAs.酵母基因YNL292w编码一种假尿苷合酶(Pus4),该酶催化线粒体和细胞质转运RNA中假尿苷55的形成。
Nucleic Acids Res. 1997 Nov 15;25(22):4493-9. doi: 10.1093/nar/25.22.4493.
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