关于基因组图谱的标准CORBA接口的提案。
A proposal for a standard CORBA interface for genome maps.
作者信息
Barillot E, Leser U, Lijnzaad P, Cussat-Blanc C, Jungfer K, Guyon F, Vaysseix G, Helgesen C, Rodriguez-Tomé P
机构信息
GIS Infobiogen, 7 rue Guy Môquet - BP 8, 94801 Villejuif cedex, France.
出版信息
Bioinformatics. 1999 Feb;15(2):157-69. doi: 10.1093/bioinformatics/15.2.157.
MOTIVATION
The scientific community urgently needs to standardize the exchange of biological data. This is helped by the use of a common protocol and the definition of shared data structures. We have based our standardization work on CORBA, a technology that has become a standard in the past years and allows interoperability between distributed objects.
RESULTS
We have defined an IDL specification for genome maps and present it to the scientific community. We have implemented CORBA servers based on this IDL to distribute RHdb and HuGeMap maps. The IDL will co-evolve with the needs of the mapping community.
AVAILABILITY
The standard IDL for genome maps is available at http:// corba.ebi.ac.uk/RHdb/EUCORBA/MapIDL.htm l. The IORs to browse maps from Infobiogen and EBI are at http://www.infobiogen.fr/services/Hugemap/IOR and http://corba.ebi.ac.uk/RHdb/EUCORBA/IOR CONTACT: manu@infobiogen.fr, tome@ebi.ac.uk
动机
科学界迫切需要规范生物数据的交换。使用通用协议和定义共享数据结构有助于实现这一点。我们的标准化工作基于CORBA，这是一项在过去几年已成为标准且允许分布式对象之间实现互操作性的技术。
结果
我们为基因组图谱定义了一个IDL规范，并将其提交给科学界。我们基于此IDL实现了CORBA服务器，以分发RHdb和HuGeMap图谱。该IDL将随着图谱绘制社区的需求共同发展。
可用性
基因组图谱的标准IDL可在http://corba.ebi.ac.uk/RHdb/EUCORBA/MapIDL.htm l获取。用于浏览来自Infobiogen和EBI图谱的IOR分别位于http://www.infobiogen.fr/services/Hugemap/IOR和http://corba.ebi.ac.uk/RHdb/EUCORBA/IOR
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