Kowalski K, Czolij R, King G F, Crossley M, Mackay J P
Department of Biochemistry, University of Sydney, NSW, Australia.
J Biomol NMR. 1999 Mar;13(3):249-62. doi: 10.1023/a:1008309602929.
Zinc fingers (ZnFs) are generally regarded as DNA-binding motifs. However, a number of recent reports have implicated particular ZnFs in the mediation of protein-protein interactions. The N-terminal ZnF of GATA-1 (NF) is one such finger, having been shown to interact with a number of other proteins, including the recently discovered transcriptional co-factor FOG. Here we solve the three-dimensional structure of the NF in solution using multidimensional 1H/15N NMR spectroscopy, and we use 1H/15N spin relaxation measurements to investigate its backbone dynamics. The structure consists of two distorted beta-hairpins and a single alpha-helix, and is similar to that of the C-terminal ZnF of chicken GATA-1. Comparisons of the NF structure with those of other C4-type zinc binding motifs, including hormone receptor and LIM domains, also reveal substantial structural homology. Finally, we use the structure to map the spatial locations of NF residues shown by mutagenesis to be essential for FOG binding, and demonstrate that these residues all lie on a single face of the NF. Notably, this face is well removed from the putative DNA-binding face of the NF, an observation which is suggestive of simultaneous roles for the NF; that is, stabilisation of GATA-1 DNA complexes and recruitment of FOG to GATA-1-controlled promoter regions.
锌指(ZnF)通常被视为DNA结合基序。然而,最近的一些报道表明特定的锌指参与了蛋白质-蛋白质相互作用的介导。GATA-1(NF)的N端锌指就是这样一种锌指,它已被证明能与许多其他蛋白质相互作用,包括最近发现的转录辅因子FOG。在这里,我们使用多维1H/15N NMR光谱法解析了溶液中NF的三维结构,并使用1H/15N自旋弛豫测量来研究其主链动力学。该结构由两个扭曲的β-发夹和一个单一的α-螺旋组成,与鸡GATA-1的C端锌指结构相似。将NF结构与其他C4型锌结合基序(包括激素受体和LIM结构域)的结构进行比较,也揭示了显著的结构同源性。最后,我们利用该结构绘制了通过诱变显示对FOG结合至关重要的NF残基的空间位置,并证明这些残基都位于NF的一个面上。值得注意的是,这个面与NF假定的DNA结合面相距甚远,这一观察结果暗示了NF的多种作用;也就是说,稳定GATA-1 DNA复合物以及将FOG招募到GATA-1控制的启动子区域。