Pennings S
Department of Biomedical Sciences, University of Edinburgh, Scotland, United Kingdom.
Methods Enzymol. 1999;304:298-312. doi: 10.1016/s0076-6879(99)04018-5.
Recent recognition of the sensitivity of polyacrylamide gel electrophoresis to macromolecular conformation has provided a source of new applications. In chromatin research, nucleoprotein gel electrophoresis can yield a direct and visual estimate of the number and relative abundance of different positions adopted by the core histone octamer on DNA, as well as their locations relative to the middle of the DNA fragment. It is the only technique available for the fractionation of such nucleosome positioning isomers and leaves them intact. Thus this simple method constitutes a powerful tool to analyze and manipulate populations of variously positioned nucleosomes in their native state. Complementing conventional invasive enzymatic procedures that rely on the analysis of cutting patterns on nucleosomal DNA, these procedures are now revealing that histone octamers can reconstitute to a number of discrete, often overlapping, locations on most DNA sequences. Further capitalizing on these advantages of nucleoprotein gel analysis, the development of the technique into a two-dimensional assay has permitted a rare view at the dynamics of nucleosome positioning. Nucleosomes can redistribute between possible positions on DNA, with the distribution patterns of nucleosomes along the DNA being in dynamic equilibrium at 37 degrees in relatively low ionic strength conditions. This mobility of nucleosomes on DNA means that possible positions of nucleosomes can be defined precisely but that the actual locations of the nucleosomes are dynamic. It provides a compelling argument that a nucleosome position should be regarded as a probability rather than a static factor type of binding. This supports a more dynamic view of the nucleosomal organization, which seems more in accordance with the dynamic nature of gene expression. In providing the flexibility for adaptation, multiple positioning and nucleosome mobility could constitute essential ingredients of the mechanisms by which chromatin participates in gene regulation.
最近对聚丙烯酰胺凝胶电泳对大分子构象敏感性的认识为新应用提供了来源。在染色质研究中,核蛋白凝胶电泳可以直接直观地估计核心组蛋白八聚体在DNA上所采取的不同位置的数量和相对丰度,以及它们相对于DNA片段中间的位置。它是用于分离此类核小体定位异构体并使其保持完整的唯一可用技术。因此,这种简单的方法构成了一种强大的工具,可用于分析和操纵天然状态下各种定位的核小体群体。与依赖于分析核小体DNA切割模式的传统侵入性酶促程序相辅相成,这些程序现在表明组蛋白八聚体可以在大多数DNA序列上重构到许多离散的、通常重叠的位置。进一步利用核蛋白凝胶分析的这些优势,将该技术发展为二维分析方法,使得人们能够难得一见核小体定位的动态过程。核小体可以在DNA上的可能位置之间重新分布,在相对低离子强度条件下,37摄氏度时核小体沿DNA的分布模式处于动态平衡。核小体在DNA上的这种移动性意味着可以精确地定义核小体的可能位置,但核小体的实际位置是动态的。这有力地证明了核小体位置应被视为一种概率,而不是一种静态的结合因子类型。这支持了对核小体组织的更动态的观点,这似乎更符合基因表达的动态性质。在提供适应性灵活性、多重定位和核小体移动性方面,它们可能构成染色质参与基因调控机制的重要组成部分。