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RNA折叠:来自近期晶体结构的见解

RNA folds: insights from recent crystal structures.

作者信息

Ferré-D'Amaré A R, Doudna J A

机构信息

Department of Molecular Biophysics and Biochemistry, Howard Hughes Medical Institute, Yale University, New Haven, Connecticut 06520-8114, USA.

出版信息

Annu Rev Biophys Biomol Struct. 1999;28:57-73. doi: 10.1146/annurev.biophys.28.1.57.

DOI:10.1146/annurev.biophys.28.1.57
PMID:10410795
Abstract

An RNA fold is the result of packing together two or more coaxial helical stacks. To date, four RNA folds have been determined at near-atomic resolution by X-ray crystallography: transfer RNA, the hammerhead ribozyme, the P4-P6 domain of the Tetrahymena group I intron, and the hepatitis delta virus ribozyme. All four folds result in RNAs that are considerably more compact than isolated A-form duplexes. These structures illustrate, to varying degrees, three modes of fold stabilization: association of complementary molecular surfaces, stabilization of close RNA packing by binding of cations, and stabilization through pseudoknotting.

摘要

RNA折叠是两个或更多同轴螺旋堆积在一起的结果。迄今为止,通过X射线晶体学已在近原子分辨率下确定了四种RNA折叠:转运RNA、锤头状核酶、嗜热四膜虫I组内含子的P4-P6结构域以及丁型肝炎病毒核酶。所有这四种折叠产生的RNA都比分离的A型双链体紧凑得多。这些结构不同程度地说明了三种折叠稳定模式:互补分子表面的缔合、通过阳离子结合稳定紧密的RNA堆积以及通过假结进行稳定。

相似文献

1
RNA folds: insights from recent crystal structures.RNA折叠:来自近期晶体结构的见解
Annu Rev Biophys Biomol Struct. 1999;28:57-73. doi: 10.1146/annurev.biophys.28.1.57.
2
Evaluation of uranyl photocleavage as a probe to monitor ion binding and flexibility in RNAs.评估铀酰光裂解作为监测RNA中离子结合和柔性的探针。
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Ribozyme architectural diversity made visible.核酶结构多样性得以显现。
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Coaxially stacked RNA helices in the catalytic center of the Tetrahymena ribozyme.嗜热四膜虫核酶催化中心的同轴堆叠RNA螺旋。
Science. 1994 Sep 16;265(5179):1709-12. doi: 10.1126/science.8085157.
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Crystal structure of a hepatitis delta virus ribozyme.丁型肝炎病毒核酶的晶体结构。
Nature. 1998 Oct 8;395(6702):567-74. doi: 10.1038/26912.
6
The P4-P6 domain directs higher order folding of the Tetrahymena ribozyme core.P4 - P6结构域指导嗜热四膜虫核酶核心的高级折叠。
Biochemistry. 1997 Mar 18;36(11):3159-69. doi: 10.1021/bi962428+.
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A general module for RNA crystallization.RNA结晶通用模块。
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Self-assembly of a group I intron active site from its component tertiary structural domains.第一类内含子活性位点由其组成的三级结构域进行自组装。
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