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节杆菌D-木糖异构酶D254,256E突变体的Al3+复合物在2.40 Å分辨率下的结构测定与精修。抑制剂诱导金属离子移动的进一步证据。

Structure determination and refinement of the Al3+ complex of the D254,256E mutant of Arthrobacter D-xylose isomerase at 2.40 A resolution. Further evidence for inhibitor-induced metal ion movement.

作者信息

Gérczei T, Böcskei Z, Szabó E, Asbóth B, Náray-Szabó G

机构信息

Department of Theoretical Chemistry, L. Eötvös University, Budapest, Hungary.

出版信息

Int J Biol Macromol. 1999 Aug;25(4):329-36. doi: 10.1016/s0141-8130(99)00051-3.

Abstract

The structure of the D254.256E double mutant of Arthrobacter xylose isomerase with Al3+ at both metal-binding sites was determined by the molecular replacement method at a conventional R-factor of 0.179. Binding of the two Al3+ does not alter the overall structure significantly. However, there are local rearrangements in the octahedral co-ordination sphere of the Al3+. The inhibitor molecule moves somewhat away from the active site. Furthermore, evidence was revealed for metal ion movement from site 2(1) to site 2(2) upon double mutation. Xylose isomerase requires two divalent metal cations for activation. The catalytic metal ion is translocated 1.8 A away from its initial position during the catalytic reaction. The fact that both activating and inactivating metals (including Al3+) were found exclusively at a single location in the double mutant was an indication that the consequently missing shuttle may account for the crippled catalytic efficiency.

摘要

通过分子置换法确定了木糖异构化节杆菌D254.256E双突变体在两个金属结合位点均结合Al³⁺时的结构,传统R因子为0.179。两个Al³⁺的结合并未显著改变整体结构。然而,Al³⁺的八面体配位球存在局部重排。抑制剂分子从活性位点移开了一些。此外,有证据表明双突变后金属离子从位点2(1)移动到了位点2(2)。木糖异构酶需要两个二价金属阳离子来激活。催化金属离子在催化反应过程中从其初始位置移位了1.8 Å。在双突变体中,激活和失活金属(包括Al³⁺)都仅在单个位置被发现,这一事实表明因此缺失的穿梭机制可能是催化效率受损的原因。

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