Macedo-Ribeiro S, Hemrika W, Renirie R, Wever R, Messerschmidt A
Max-Planck Institut für Biochemie, Abteilung Strukturforschung, Martinsried, Germany.
J Biol Inorg Chem. 1999 Apr;4(2):209-19. doi: 10.1007/s007750050306.
The X-ray structures of the chloroperoxidase from Curvularia inaequalis, heterologously expressed in Saccharomyces cerevisiae, have been determined both in its apo and in its holo forms at 1.66 and 2.11 A resolution, respectively. The crystal structures reveal that the overall structure of this enzyme remains nearly unaltered, particularly at the metal binding site. At the active site of the apo-chloroperoxidase structure a clearly defined sulfate ion was found, partially stabilised through electrostatic interactions and hydrogen bonds with positively charged residues involved in the interactions with the vanadate in the native protein. The vanadate binding pocket seems to form a very rigid frame stabilising oxyanion binding. The rigidity of this active site matrix is the result of a large number of hydrogen bonding interactions involving side chains and the main chain of residues lining the active site. The structures of single site mutants to alanine of the catalytic residue His404 and the vanadium protein ligand His496 have also been analysed. Additionally we determined the structural effects of mutations to alanine of residue Arg360, directly involved in the compensation of the negative charge of the vanadate group, and of residue Asp292 involved in forming a salt bridge with Arg490 which also interacts with the vanadate. The enzymatic chlorinating activity is drastically reduced to approximately 1% in mutants D292A, H404A and H496A. The structures of the mutants confirm the view of the active site of this chloroperoxidase as a rigid matrix providing an oxyanion binding site. No large changes are observed at the active site for any of the analysed mutants. The empty space left by replacement of large side chains by alanines is usually occupied by a new solvent molecule which partially replaces the hydrogen bonding interactions to the vanadate. The new solvent molecules additionally replace part of the interactions the mutated side chains were making to other residues lining the active site frame. When this is not possible, another side chain in the proximity of the mutated residue moves in order to satisfy the hydrogen bonding potential of the residues located at the active site frame.
在酿酒酵母中异源表达的不等弯孢霉氯过氧化物酶的X射线结构,已分别在其脱辅基形式和全酶形式下以1.66 Å和2.11 Å的分辨率测定。晶体结构表明,该酶的整体结构几乎保持不变,特别是在金属结合位点。在脱辅基氯过氧化物酶结构的活性位点发现了一个明确界定的硫酸根离子,它通过静电相互作用和与天然蛋白质中与钒酸盐相互作用的带正电荷残基形成的氢键而部分稳定。钒酸盐结合口袋似乎形成了一个非常刚性的框架,稳定了氧阴离子的结合。这个活性位点基质的刚性是大量涉及活性位点内衬残基侧链和主链的氢键相互作用的结果。还分析了催化残基His404和钒蛋白配体His496的单点丙氨酸突变体的结构。此外,我们确定了直接参与补偿钒酸根基团负电荷的残基Arg360以及参与与也与钒酸盐相互作用的Arg490形成盐桥的残基Asp292的丙氨酸突变的结构效应。在突变体D292A、H404A和H496A中,酶促氯化活性急剧降低至约1%。突变体的结构证实了这种氯过氧化物酶活性位点是一个提供氧阴离子结合位点的刚性基质的观点。对于任何分析的突变体,在活性位点均未观察到重大变化。用丙氨酸取代大侧链留下的空位通常被一个新的溶剂分子占据,该溶剂分子部分取代了与钒酸盐的氢键相互作用。新的溶剂分子还取代了突变侧链与活性位点框架内衬的其他残基的部分相互作用。当无法做到这一点时,突变残基附近的另一个侧链会移动,以满足位于活性位点框架的残基的氢键潜力。