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酶催化中的氢键作用:能量贡献分析

Hydrogen bonding in enzymatic catalysis: analysis of energetic contributions.

作者信息

Shan S O, Herschlag D

机构信息

Department of Biochemistry, Stanford University, California 94305-5307, USA.

出版信息

Methods Enzymol. 1999;308:246-76. doi: 10.1016/s0076-6879(99)08013-1.

Abstract

Enzymes can provide catalysis by increasing the strengthening of hydrogen bonds to groups undergoing charge rearrangement in the course of reaction relative to the strengthening of the hydrogen bonds in the corresponding solution reactions. This can be accomplished by using hydrogen bond donors and acceptors that are stronger than water and by lowering the effective dielectric relative to that in aqueous solution. We suggest that these electrostatic effects are of general significance in enzymatic catalysis. The effective dielectric is lowered by the overall "rigidity" of the folded enzyme, which facilitates the formation of active site interactions, and by the fixation of active site functional groups within the enzyme x substrate complex. This underscores the fundamental interconnection of catalytic mechanisms in enzymatic catalysis.

摘要

酶可以通过在反应过程中相对于相应溶液反应中氢键增强而言,增强与经历电荷重排的基团的氢键作用来提供催化作用。这可以通过使用比水更强的氢键供体和受体,以及相对于水溶液降低有效介电常数来实现。我们认为这些静电效应在酶催化中具有普遍意义。有效介电常数通过折叠酶的整体“刚性”降低,这有利于活性位点相互作用的形成,以及通过酶-底物复合物中活性位点官能团的固定来降低。这强调了酶催化中催化机制的基本相互联系。

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