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腈类振动光谱中的氢键蓝移由氢键几何结构和动力学决定。

Hydrogen Bond Blueshifts in Nitrile Vibrational Spectra Are Dictated by Hydrogen Bond Geometry and Dynamics.

作者信息

Kirsh Jacob M, Kozuch Jacek

机构信息

Department of Chemistry, Stanford University, Stanford, California 94305-5012, United States.

Freie Universität Berlin, Physics Department, Experimental Molecular Biophysics, Arnimallee 14, 14195 Berlin, Germany.

出版信息

JACS Au. 2024 Dec 5;4(12):4844-4855. doi: 10.1021/jacsau.4c00811. eCollection 2024 Dec 23.

Abstract

Vibrational Stark effect (VSE) spectroscopy has become one of the most important experimental approaches to determine the strength of noncovalent, electrostatic interactions in chemistry and biology and to quantify their influence on structure and reactivity. Nitriles (C≡N) have been widely used as VSE probes, but their application has been complicated by an anomalous hydrogen bond (HB) blueshift which is not encompassed within the VSE framework. We present an empirical model describing the anomalous HB blueshift in terms of H-bonding geometry, i.e., as a function of HB distance and angle with respect to the C≡N group. This model is obtained by comparing vibrational observables from density functional theory and electrostatics from the polarizable AMOEBA force field, and it provides a physical explanation for the HB blueshift in terms of underlying multipolar and Pauli repulsion contributions. Additionally, we compare predicted blueshifts with experimental results and find our model provides a useful, direct framework to analyze HB geometry for rigid HBs, such as within proteins or chemical frameworks. In contrast, nitriles in highly dynamic H-bonding environments like protic solvents are no longer a function solely of geometry; this is a consequence of motional narrowing, which we demonstrate by simulating IR spectra. Overall, when HB geometry and dynamics are accounted for, an excellent correlation is found between observed and predicted HB blueshifts. This correlation includes different types of nitriles and HB donors, suggesting that our model is general and can aid in understanding HB blueshifts wherever nitriles can be implemented.

摘要

振动斯塔克效应(VSE)光谱已成为确定化学和生物学中非共价静电相互作用强度以及量化其对结构和反应性影响的最重要实验方法之一。腈(C≡N)已被广泛用作VSE探针,但其应用因异常氢键(HB)蓝移而变得复杂,这种蓝移并不包含在VSE框架内。我们提出了一个经验模型,根据氢键几何结构来描述异常HB蓝移,即作为相对于C≡N基团的HB距离和角度的函数。该模型是通过比较密度泛函理论的振动可观测量和可极化AMOEBA力场的静电学得到的,它从潜在的多极和泡利排斥贡献方面为HB蓝移提供了物理解释。此外,我们将预测的蓝移与实验结果进行比较,发现我们的模型为分析刚性HB(如蛋白质或化学框架内)的HB几何结构提供了一个有用的直接框架。相比之下,在质子溶剂等高动态氢键环境中的腈不再仅仅是几何结构的函数;这是运动变窄的结果,我们通过模拟红外光谱证明了这一点。总体而言,当考虑到HB几何结构和动力学时,观察到的和预测的HB蓝移之间存在极好的相关性。这种相关性包括不同类型的腈和HB供体,这表明我们的模型具有普遍性,有助于理解在任何可以使用腈的地方的HB蓝移。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cca/11672138/bd7964b068b8/au4c00811_0001.jpg

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