• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

利用微卫星检测种群的扩张与衰退。

Detecting population expansion and decline using microsatellites.

作者信息

Beaumont M A

机构信息

Institute of Zoology, Zoological Society of London, London NW1 4RY, United Kingdom.

出版信息

Genetics. 1999 Dec;153(4):2013-29. doi: 10.1093/genetics/153.4.2013.

DOI:10.1093/genetics/153.4.2013
PMID:10581303
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1460853/
Abstract

This article considers a demographic model where a population varies in size either linearly or exponentially. The genealogical history of microsatellite data sampled from this population can be described using coalescent theory. A method is presented whereby the posterior probability distribution of the genealogical and demographic parameters can be estimated using Markov chain Monte Carlo simulations. The likelihood surface for the demographic parameters is complicated and its general features are described. The method is then applied to published microsatellite data from two populations. Data from the northern hairy-nosed wombat show strong evidence of decline. Data from European humans show weak evidence of expansion.

摘要

本文考虑了一个人口数量呈线性或指数变化的人口统计学模型。从该种群中采样的微卫星数据的谱系历史可以用合并理论来描述。提出了一种方法,通过马尔可夫链蒙特卡罗模拟来估计谱系和人口统计学参数的后验概率分布。描述了人口统计学参数的似然表面,其具有复杂的特征。然后将该方法应用于已发表的来自两个种群的微卫星数据。来自北方毛鼻袋熊的数据显示出种群数量下降的有力证据。来自欧洲人类的数据显示出种群数量扩张的微弱证据。

相似文献

1
Detecting population expansion and decline using microsatellites.利用微卫星检测种群的扩张与衰退。
Genetics. 1999 Dec;153(4):2013-29. doi: 10.1093/genetics/153.4.2013.
2
Inferring population decline and expansion from microsatellite data: a simulation-based evaluation of the Msvar method.从微卫星数据推断种群衰退和扩张:基于模拟的 Msvar 方法评估。
Genetics. 2011 May;188(1):165-79. doi: 10.1534/genetics.110.121764. Epub 2011 Mar 8.
3
Markov chain Monte Carlo analysis of human Y-chromosome microsatellites provides evidence of biased mutation.人类Y染色体微卫星的马尔可夫链蒙特卡罗分析提供了偏向性突变的证据。
Proc Natl Acad Sci U S A. 1999 Oct 12;96(21):11916-21. doi: 10.1073/pnas.96.21.11916.
4
Estimation of population growth or decline in genetically monitored populations.基因监测群体中种群增长或下降的估计。
Genetics. 2003 Jul;164(3):1139-60. doi: 10.1093/genetics/164.3.1139.
5
Genetic evidence for long-term population decline in a savannah-dwelling primate: inferences from a hierarchical bayesian model.草原栖息灵长类动物长期种群数量下降的遗传证据:来自分层贝叶斯模型的推断
Mol Biol Evol. 2002 Nov;19(11):1981-90. doi: 10.1093/oxfordjournals.molbev.a004022.
6
Joint inference of microsatellite mutation models, population history and genealogies using transdimensional Markov Chain Monte Carlo.使用跨维马尔可夫链蒙特卡罗方法联合推断微卫星突变模型、种群历史和系统发育。
Genetics. 2011 May;188(1):151-64. doi: 10.1534/genetics.110.125260. Epub 2011 Mar 8.
7
Distinguishing migration from isolation: a Markov chain Monte Carlo approach.区分迁移与隔离:一种马尔可夫链蒙特卡罗方法。
Genetics. 2001 Jun;158(2):885-96. doi: 10.1093/genetics/158.2.885.
8
Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics.整合到费尔森斯坦方程中以改进群体遗传学中的马尔可夫链蒙特卡罗方法。
Proc Natl Acad Sci U S A. 2007 Feb 20;104(8):2785-90. doi: 10.1073/pnas.0611164104. Epub 2007 Feb 14.
9
Maximum-likelihood and markov chain monte carlo approaches to estimate inbreeding and effective size from allele frequency changes.基于等位基因频率变化估计近亲繁殖和有效种群大小的最大似然法和马尔可夫链蒙特卡罗方法
Genetics. 2003 Jul;164(3):1189-204. doi: 10.1093/genetics/164.3.1189.
10
A likelihood approach to populations samples of microsatellite alleles.一种针对微卫星等位基因群体样本的似然性方法。
Genetics. 1997 Jun;146(2):711-6. doi: 10.1093/genetics/146.2.711.

引用本文的文献

1
The effect of habitat loss and fragmentation on isolation by distance and divergence.栖息地丧失和破碎化对距离隔离和分化的影响。
Proc Natl Acad Sci U S A. 2025 Aug 5;122(31):e2410951122. doi: 10.1073/pnas.2410951122. Epub 2025 Jul 28.
2
The Application of Microsatellite Markers as Molecular Tools for Studying Genomic Variability in Vertebrate Populations.微卫星标记作为研究脊椎动物群体基因组变异性的分子工具的应用。
Curr Issues Mol Biol. 2025 Jun 11;47(6):447. doi: 10.3390/cimb47060447.
3
Global meta-analysis shows action is needed to halt genetic diversity loss.全球荟萃分析表明,需要采取行动来阻止遗传多样性丧失。
Nature. 2025 Feb;638(8051):704-710. doi: 10.1038/s41586-024-08458-x. Epub 2025 Jan 29.
4
Sequencing and characterizing human mitochondrial genomes in the biobank-based genomic research paradigm.在基于生物样本库的基因组研究范式中对人类线粒体基因组进行测序和特征分析。
Sci China Life Sci. 2025 Jan 21. doi: 10.1007/s11427-024-2736-7.
5
Spatio-Temporal Changes in Effective Population Size in an Expanding Metapopulation of Eurasian Otters.欧亚水獭扩张集合种群中有效种群大小的时空变化
Evol Appl. 2025 Jan 17;18(1):e70067. doi: 10.1111/eva.70067. eCollection 2025 Jan.
6
Effects of Social Structure on Effective Population Size Change Estimates.社会结构对有效种群大小变化估计的影响。
Evol Appl. 2025 Jan 14;18(1):e70063. doi: 10.1111/eva.70063. eCollection 2025 Jan.
7
Genetic diversity and population structure among native, naturalized, and invasive populations of the common yellow monkeyflower, (Phrymaceae).常见黄猴面花(透骨草科)本地、归化及入侵种群的遗传多样性与种群结构
Ecol Evol. 2023 Apr 7;13(4):e9596. doi: 10.1002/ece3.9596. eCollection 2023 Apr.
8
The genetic diversity and structure in the European polecat were not affected by the introduction of the American mink in Poland.欧洲雪貂的遗传多样性和结构不受波兰引进美洲水貂的影响。
PLoS One. 2022 Sep 28;17(9):e0266161. doi: 10.1371/journal.pone.0266161. eCollection 2022.
9
A population genetic analysis of the Critically Endangered Madagascar big-headed turtle, Erymnochelys madagascariensis across captive and wild populations.对濒危马达加斯加大头龟(Erymnochelys madagascariensis)在圈养和野生种群中的种群遗传分析。
Sci Rep. 2022 May 24;12(1):8740. doi: 10.1038/s41598-022-12422-y.
10
Searching for genetic evidence of demographic decline in an arctic seabird: beware of overlapping generations.在北极海鸟中寻找遗传证据表明人口减少:注意重叠世代。
Heredity (Edinb). 2022 May;128(5):364-376. doi: 10.1038/s41437-022-00515-3. Epub 2022 Mar 5.

本文引用的文献

1
Genealogical inference from microsatellite data.基于微卫星数据的系谱推断。
Genetics. 1998 Sep;150(1):499-510. doi: 10.1093/genetics/150.1.499.
2
Genetic evidence for a Paleolithic human population expansion in Africa.旧石器时代非洲人类种群扩张的遗传学证据。
Proc Natl Acad Sci U S A. 1998 Jul 7;95(14):8119-23. doi: 10.1073/pnas.95.14.8119.
3
Inference of population history using a likelihood approach.使用似然法推断群体历史。
Genetics. 1998 Jul;149(3):1539-46. doi: 10.1093/genetics/149.3.1539.
4
Maximum likelihood estimation of population growth rates based on the coalescent.基于溯祖理论的种群增长率的最大似然估计
Genetics. 1998 May;149(1):429-34. doi: 10.1093/genetics/149.1.429.
5
Structured coalescent processes on different time scales.不同时间尺度上的结构化合并过程。
Genetics. 1997 Aug;146(4):1501-14. doi: 10.1093/genetics/146.4.1501.
6
Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method.使用DNA序列的贝叶斯系统发育推断:一种马尔可夫链蒙特卡罗方法。
Mol Biol Evol. 1997 Jul;14(7):717-24. doi: 10.1093/oxfordjournals.molbev.a025811.
7
Microsatellite diversity and the demographic history of modern humans.微卫星多样性与现代人类的人口历史。
Proc Natl Acad Sci U S A. 1997 Apr 1;94(7):3100-3. doi: 10.1073/pnas.94.7.3100.
8
Inferring coalescence times from DNA sequence data.从DNA序列数据推断合并时间。
Genetics. 1997 Feb;145(2):505-18. doi: 10.1093/genetics/145.2.505.
9
Patterns of differentiation and hybridization in North American wolflike canids, revealed by analysis of microsatellite loci.通过微卫星基因座分析揭示的北美狼样犬科动物的分化和杂交模式。
Mol Biol Evol. 1994 Jul;11(4):553-70. doi: 10.1093/oxfordjournals.molbev.a040137.
10
Genetic variation of microsatellite loci in a bottlenecked species: the northern hairy-nosed wombat Lasiorhinus krefftii.一个经历瓶颈效应物种的微卫星位点的遗传变异:北方毛鼻袋熊(Lasiorhinus krefftii)
Mol Ecol. 1994 Aug;3(4):277-90. doi: 10.1111/j.1365-294x.1994.tb00068.x.