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三螺旋DNA的结晶及初步晶体学研究

Crystallization and preliminary crystallographic study of triple-helical DNA.

作者信息

Han Z J, Rhee S, Liu K, Miles H T, Davies D R

机构信息

Laboratory of Molecular Biology, NIDDK, National Institutes of Health, Bethesda, MD 20892, USA.

出版信息

Acta Crystallogr D Biol Crystallogr. 2000 Jan;56(Pt 1):104-5. doi: 10.1107/s0907444999012895.

DOI:10.1107/s0907444999012895
PMID:10666643
Abstract

Single crystals of d(CTCCT(S)CCGCGCG).d(CGCGCGGAG) have been grown by the vapor-diffusion method using 2-methyl-2,4-pentanediol as a precipitant. The crystals are tetragonal, space group P4(2), with unit-cell parameters a = b = 53.8, c = 43.1 A, and diffract to 1.8 A resolution at a synchrotron X-ray beamline. In the crystal, the asymmetric unit contains one copy of the construct. The two halves of the structure are related by non-crystallographic twofold symmetry. These observations are consistent with the conclusion that the sequences of the 12-mer and 9-mer oligonucleotides form a duplex DNA at one end and a triplex DNA at the other end.

摘要

已使用2-甲基-2,4-戊二醇作为沉淀剂,通过气相扩散法生长出d(CTCCT(S)CCGCGCG).d(CGCGCGGAG)的单晶。晶体为四方晶系,空间群P4(2),晶胞参数a = b = 53.8,c = 43.1 Å,在同步加速器X射线束线处衍射至1.8 Å分辨率。在晶体中,不对称单元包含该构建体的一个拷贝。结构的两半通过非晶体学二重对称性相关联。这些观察结果与以下结论一致:12聚体和9聚体寡核苷酸序列一端形成双链DNA,另一端形成三链DNA。

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引用本文的文献

1
Triplex-induced DNA damage response.三聚体诱导的 DNA 损伤反应。
Yale J Biol Med. 2013 Dec 13;86(4):471-8.
2
Triplex technology in studies of DNA damage, DNA repair, and mutagenesis.三重 PCR 技术在 DNA 损伤、DNA 修复和诱变研究中的应用。
Biochimie. 2011 Aug;93(8):1197-208. doi: 10.1016/j.biochi.2011.04.001. Epub 2011 Apr 11.
3
Human XPA and RPA DNA repair proteins participate in specific recognition of triplex-induced helical distortions.人类XPA和RPA DNA修复蛋白参与三链体诱导的螺旋结构畸变的特异性识别。
Proc Natl Acad Sci U S A. 2002 Apr 30;99(9):5848-53. doi: 10.1073/pnas.082193799. Epub 2002 Apr 23.