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健康个体中NF1基因的异常剪接模拟了NF1患者中突变诱导的剪接改变。

Illegitimate splicing of the NF1 gene in healthy individuals mimics mutation-induced splicing alterations in NF1 patients.

作者信息

Wimmer K, Eckart M, Rehder H, Fonatsch C

机构信息

Institut für Medizinische Biologie, Universität Wien, Vienna, Austria.

出版信息

Hum Genet. 2000 Mar;106(3):311-3. doi: 10.1007/s004390051043.

Abstract

Neurofibromatosis type 1 (NF1) is a common inherited disease affecting one in 3,500 individuals. The mutation rate in the NF1 gene is one of the highest known for human genes. Compared to other methods, the protein truncation test (PTT) and subsequent sequence analysis of cloned cDNA provides improved efficiency in detecting NF1 mutations that are dispersed throughout the gene spanning 350 kb of genomic DNA. Sequencing of cDNA of patients affected with NF1 mutations revealed multiple splicing errors. Since similar missplicings were also found in "aged" blood of healthy individuals, they are most likely attributable to a general decrease in splice site selection in aged blood. We show that restoring viability of lymphocytes before RNA extraction by cultivation and PHA stimulation diminishes aberrant splicing in aged blood and is thus useful to circumvent splicing alterations which are frequently compromising mutation detection in patient samples and mimic mutation-induced alterations of mRNA.

摘要

1型神经纤维瘤病(NF1)是一种常见的遗传性疾病,每3500人中就有1人患病。NF1基因的突变率是已知人类基因中最高的之一。与其他方法相比,蛋白质截短试验(PTT)以及随后对克隆的cDNA进行序列分析,在检测遍布跨越350kb基因组DNA的NF1基因的突变方面,提高了效率。对受NF1突变影响患者的cDNA测序揭示了多个剪接错误。由于在健康个体的“老龄”血液中也发现了类似的错配剪接,它们很可能归因于老龄血液中剪接位点选择的普遍下降。我们表明,通过培养和PHA刺激在RNA提取前恢复淋巴细胞的活力,可减少老龄血液中的异常剪接,因此有助于规避剪接改变,这些改变经常会影响患者样本中的突变检测,并模拟突变诱导的mRNA改变。

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