Guddat L W, Shan L, Broomell C, Ramsland P A, Fan Z, Anchin J M, Linthicum D S, Edmundson A B
Crystallography Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, 73104, USA.
J Mol Biol. 2000 Sep 29;302(4):853-72. doi: 10.1006/jmbi.2000.4083.
The three-dimensional structure of a complex of an Fab from a murine IgG2b(lambda) antibody (NC10.14) with a high potency sweet tasting hap- ten, N-(p-cyanophenyl)-N'-(diphenylmethyl)-N"-(carboxymethyl)guan idine (NC174), has been determined to 2.6 A resolution by X-ray crystallography. This complex crystallized in the triclinic space group P1, with two molecules in the asymmetric unit. In contrast to a companion monoclonal antibody (NC6.8) with a kappa-type light chain and similar high affinity for the NC174 ligand, the NC10.14 antibody possessed a large and deep antigen combining site bounded primarily by the third complementarity-determining regions (CDR3s) of the light and heavy chains. CDR3 of the heavy chain dominated the site and its crown protruded into the external solvent as a type 1' beta-turn. NC174 was nested against HCDR3 and was held in place by two tryptophan side-chains (L91 and L96) from LCDR3. The diphenyl rings were accommodated on an upper tier of the binding pocket that is largely hydrophobic. At the floor of the site, a positively charged arginine side-chain (H95) stabilized the orientation of the electronegative cyano group of the hapten. The negative charge on the acetate group was partially neutralized by a hydrogen bond with the phenolic hydroxyl group of tyrosine H58. Comparisons of the modes of binding of NC174 to the NC6.8 and NC10.14 antibodies illustrate the enormous structural and mechanistic diversity manifest by immune responses.
已通过X射线晶体学确定了来自鼠IgG2b(λ)抗体(NC10.14)的Fab与高效甜味半抗原N-(对氰基苯基)-N'-(二苯甲基)-N''-(羧甲基)胍(NC174)复合物的三维结构,分辨率达到2.6埃。该复合物在三斜空间群P1中结晶,不对称单元中有两个分子。与具有κ型轻链且对NC174配体具有相似高亲和力的配套单克隆抗体(NC6.8)不同,NC10.14抗体具有一个大而深的抗原结合位点,主要由轻链和重链的第三个互补决定区(CDR3)界定。重链的CDR3主导该位点,其冠部以1'型β-转角突出到外部溶剂中。NC174靠在重链CDR3上,并由来自轻链CDR3的两个色氨酸侧链(L91和L96)固定在位。二苯环容纳在结合口袋的上层,该层主要是疏水的。在该位点的底部,一个带正电荷的精氨酸侧链(H95)稳定了半抗原带负电的氰基的方向。乙酸根基团上的负电荷通过与酪氨酸H58的酚羟基形成氢键而部分中和。比较NC174与NC6.8和NC10.14抗体的结合模式,说明了免疫反应所表现出的巨大结构和机制多样性。