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水分子在结晶β-环糊精水合物中的扩散

Diffusion of water molecules in crystalline beta-cyclodextrin hydrates.

作者信息

Braesicke K, Steiner T, Saenger W, Knapp E W

机构信息

Department of Biology, Chemistry, and Pharmacy, Freie Universität Berlin, Germany.

出版信息

J Mol Graph Model. 2000 Apr;18(2):143-52, 167-8. doi: 10.1016/S1093-3263(00)00046-2.

Abstract

To understand the rapid diffusion mechanism of water molecules in the crystal lattice of hydrated beta-cyclodextrin (beta-CD), molecular dynamics (MD) simulations of crystalline beta-CD were performed at five different relative humidities corresponding to hydration states ranging from beta-CD-9.4H2O to beta-CD-12.3H2O, and in aqueous solution. The trajectories for the crystalline beta-CD hydrates had lengths of 4 ns each, whereas the simulation in aqueous solution extended to 2 ns. Transport of water molecules in the crystal was characterized in terms of a spatially varying diffusion constant and the main direction of diffusion, which were evaluated using newly developed algorithms. The main diffusion pathway winds through the cavities of adjacent doughnut shaped beta-CD molecules and is slightly slanted with respect to the crystallographic b-axis. Water molecules outside the beta-CD cavities have access to the main diffusion pathway. The diffusion constant for transport of water molecules along the main pathway calculated from the MD simulation data adopts 1/30 of the value in bulk water at room temperature. This is in agreement with estimates that can be made from experimental data on the adjustment of a beta-CD crystal to changes in relative humidity.

摘要

为了解水分子在水合β-环糊精(β-CD)晶格中的快速扩散机制,在对应于从β-CD-9.4H₂O到β-CD-12.3H₂O水合状态的五种不同相对湿度下以及在水溶液中对结晶β-CD进行了分子动力学(MD)模拟。结晶β-CD水合物的轨迹长度均为4 ns,而水溶液中的模拟延伸至2 ns。晶体中水分子的传输通过空间变化的扩散常数和扩散的主要方向来表征,这些是使用新开发的算法进行评估的。主要扩散路径蜿蜒穿过相邻甜甜圈形状的β-CD分子的空腔,并且相对于晶体学b轴略有倾斜。β-CD空腔外部的水分子可以进入主要扩散路径。根据MD模拟数据计算得出的水分子沿主要路径传输的扩散常数为室温下本体水中该值的1/30。这与根据β-CD晶体对相对湿度变化的调整的实验数据所做的估计一致。

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