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具有生命史离散事件的结构化种群模型的数值方法与参数估计

Numerical methods and parameter estimation of a structured population model with discrete events in the life history.

作者信息

Kelpin F D, Kirkilionis M A, Kooi B W

机构信息

Faculty of Biology, Free University, De Boelelaan 1087, Amsterdam, 1081 HV, The Netherlands.

出版信息

J Theor Biol. 2000 Nov 21;207(2):217-30. doi: 10.1006/jtbi.2000.2168.

Abstract

We consider two numerical methods for the solution of a physiologically structured population (PSP) model with multiple life stages and discrete event reproduction. The model describes the dynamic behaviour of a predator-prey system consisting of rotifers predating on algae. The nitrate limited algal prey population is modelled unstructured and described by an ordinary differential equation (ODE). The formulation of the rotifer dynamics is based on a simple physiological model for their two life stages, the egg and the adult stage. An egg is produced when an energy buffer reaches a threshold value. The governing equations are coupled partial differential equations (PDE) with initial and boundary conditions. The population models together with the equation for the dynamics of the nutrient result in a chemostat model. Experimental data are used to estimate the model parameters. The results obtained with the explicit finite difference (FD) technique compare well with those of the Escalator Boxcar Train (EBT) method. This justifies the use of the fast FD method for the parameter estimation, a procedure which involves repeated solution of the model equations.

摘要

我们考虑两种数值方法来求解具有多个生命阶段和离散事件繁殖的生理结构种群(PSP)模型。该模型描述了一个由以藻类为食的轮虫组成的捕食 - 猎物系统的动态行为。硝酸盐限制的藻类猎物种群被建模为非结构化的,并由一个常微分方程(ODE)描述。轮虫动态的公式基于其两个生命阶段(卵和成年阶段)的简单生理模型。当能量缓冲达到阈值时会产生一个卵。控制方程是带有初始条件和边界条件的耦合偏微分方程(PDE)。种群模型与营养物质动态方程一起构成了一个恒化器模型。实验数据用于估计模型参数。用显式有限差分(FD)技术获得的结果与自动扶梯棚车列车(EBT)方法的结果比较吻合。这证明了使用快速FD方法进行参数估计的合理性,该过程涉及对模型方程的反复求解。

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