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一种简单单结构域蛋白折叠过程中的非玻璃态动力学。

Nonglassy kinetics in the folding of a simple single-domain protein.

作者信息

Gillespie B, Plaxco K W

机构信息

Department of Chemistry and Biochemistry, University of California, Santa Barbara, CA 93106, USA.

出版信息

Proc Natl Acad Sci U S A. 2000 Oct 24;97(22):12014-9. doi: 10.1073/pnas.97.22.12014.

DOI:10.1073/pnas.97.22.12014
PMID:11050233
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC17286/
Abstract

Theory suggests that the otherwise rapid folding of simple heteropolymer models becomes "glassy"-dominated by multiple kinetically trapped misfolded states-at low temperatures or when the overall bias toward the native state is reduced relative to the depth of local minima. Experimental observations of nonsingle-exponential protein-folding kinetics have been taken as evidence that the protein-folding free energy landscape is similarly rough. No equivalent analysis, however, has been reported for a simple single-domain protein lacking prolines, disulfide bonds, prosthetic groups, or other gross structural features that might complicate folding. In an effort to characterize the glassiness of a folding free energy landscape in the absence of these potentially complicating factors, we have monitored the folding of a kinetically simple protein, peptostreptococcal protein L (protein L). We observe no statistically significant deviation from homogeneous single-exponential relaxation kinetics across temperatures ranging from near the protein's melting temperature to as low as -15 degrees C. On the basis of these observations, we estimate that, if there is a glass transition in the folding of protein L, it occurs at least 45 degrees C and possibly more than 145 degrees C below the freezing point of water. Apparently the folding free energy landscape of protein L is extremely smooth, which may be indicative of a rate-limiting step in folding that is, effectively, a nonglassy process.

摘要

理论表明,简单杂聚物模型原本快速的折叠过程在低温下或当相对于局部最小值的深度,向天然态的整体偏向性降低时,会变得以“玻璃态”为主——即由多个动力学捕获的错误折叠状态主导。非单指数蛋白质折叠动力学的实验观察结果已被视为蛋白质折叠自由能景观同样崎岖的证据。然而,对于缺乏脯氨酸、二硫键、辅基或其他可能使折叠复杂化的总体结构特征的简单单结构域蛋白质,尚未有等效的分析报道。为了在不存在这些潜在复杂因素的情况下表征折叠自由能景观的玻璃态性质,我们监测了动力学简单的蛋白质——消化链球菌蛋白L(蛋白L)的折叠过程。我们观察到,在从接近蛋白质的解链温度到低至-15摄氏度的温度范围内,与均匀单指数弛豫动力学没有统计学上的显著偏差。基于这些观察结果,我们估计,如果蛋白L的折叠存在玻璃化转变,那么它至少发生在比水的冰点低45摄氏度,甚至可能超过145摄氏度的温度下。显然,蛋白L的折叠自由能景观极其平滑,这可能表明折叠过程中的限速步骤实际上是一个非玻璃态过程。

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