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蛋白质量热双态协同性的聚合物原理

Polymer principles of protein calorimetric two-state cooperativity.

作者信息

Kaya H, Chan H S

机构信息

Department of Biochemistry, Faculty of Medicine, University of Toronto, Ontario, Canada.

出版信息

Proteins. 2000 Sep 1;40(4):637-61. doi: 10.1002/1097-0134(20000901)40:4<637::aid-prot80>3.0.co;2-4.

DOI:10.1002/1097-0134(20000901)40:4<637::aid-prot80>3.0.co;2-4
PMID:10899787
Abstract

The experimental calorimetric two-state criterion requires the van't Hoff enthalpy DeltaH(vH) around the folding/unfolding transition midpoint to be equal or very close to the calorimetric enthalpy DeltaH(cal) of the entire transition. We use an analytical model with experimental parameters from chymotrypsin inhibitor 2 to elucidate the relationship among several different van't Hoff enthalpies used in calorimetric analyses. Under reasonable assumptions, the implications of these DeltaH(vH)'s being approximately equal to DeltaH(cal) are equivalent: Enthalpic variations among denatured conformations in real proteins are much narrower than some previous lattice-model estimates, suggesting that the energy landscape theory "folding to glass transition temperature ratio" T(f) /T(g) may exceed 6.0 for real calorimetrically two-state proteins. Several popular three-dimensional lattice protein models, with different numbers of residue types in their alphabets, are found to fall short of the high experimental standard for being calorimetrically two-state. Some models postulate a multiple-conformation native state with substantial pre-denaturational energetic fluctuations well below the unfolding transition temperature, or predict a significant post-denaturational continuous conformational expansion of the denatured ensemble at temperatures well above the transition point, or both. These scenarios either disagree with experiments on protein size and dynamics, or are inconsistent with conventional interpretation of calorimetric data. However, when empirical linear baseline subtractions are employed, the resulting DeltaH(vH)/DeltaH(cal)'s for some models can be increased to values closer to unity, and baseline subtractions are found to correspond roughly to an operational definition of native-state conformational diversity. These results necessitate a re-assessment of theoretical models and experimental interpretations.

摘要

实验量热双态标准要求在折叠/去折叠转变中点附近的范特霍夫焓ΔH(vH)等于或非常接近整个转变的量热焓ΔH(cal)。我们使用一个具有来自胰凝乳蛋白酶抑制剂2的实验参数的分析模型,来阐明量热分析中使用的几种不同范特霍夫焓之间的关系。在合理假设下,这些ΔH(vH)近似等于ΔH(cal)的含义是等效的:真实蛋白质中变性构象之间的焓变比一些先前的晶格模型估计要窄得多,这表明对于真实的量热双态蛋白质,能量景观理论的“折叠温度与玻璃化转变温度之比”T(f)/T(g)可能超过6.0。发现几种流行的三维晶格蛋白质模型,其字母表中具有不同数量的残基类型,未达到量热双态的高实验标准。一些模型假定存在多构象天然态,在远低于去折叠转变温度时就有大量的变性前能量波动,或者预测在远高于转变点的温度下变性集合体有显著的变性后连续构象扩展,或者两者皆有。这些情况要么与关于蛋白质大小和动力学的实验不一致,要么与量热数据的传统解释不一致。然而,当采用经验线性基线扣除时,一些模型得到的ΔH(vH)/ΔH(cal)值可以增加到更接近1的值,并且发现基线扣除大致对应于天然态构象多样性的操作定义。这些结果需要对理论模型和实验解释进行重新评估。

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