Trifonov E N
Department of Structural Biology, The Weizmann Institute of Science, Rehovot 76100, Israel.
Gene. 2000 Dec 30;261(1):139-51. doi: 10.1016/s0378-1119(00)00476-5.
Forty different single-factor criteria and multi-factor hypotheses about chronological order of appearance of amino acids in the early evolution are summarized in consensus ranking. All available knowledge and thoughts about origin and evolution of the genetic code are thus combined in a single list where the amino acids are ranked chronologically. Due to consensus nature of the chronology it has several important properties not visible in individual rankings by any of the initial criteria. Nine amino acids of the Miller's imitation of primordial environment are all ranked as topmost (G, A, V, D, E, P, S, L, T). This result does not change even after several criteria related to Miller's data are excluded from calculations. The consensus order of appearance of the 20 amino acids on the evolutionary scene also reveals a unique and strikingly simple chronological organization of 64 codons, that could not be figured out from individual criteria: New codons appear in descending order of their thermostability, as complementary pairs, with the complements recruited sequentially from the codon repertoires of the earlier or simultaneously appearing amino acids. These three rules (Thermostability, Complementarity and Processivity) hold strictly as well as leading position of the earliest amino acids according to Miller. The consensus chronology of amino acids, G/A, V/D, P, S, E/L, T, R, N, K, Q, I, C, H, F, M, Y, W, and the derived temporal order for codons may serve, thus, as a justified working model of choice for further studies on the origin and evolution of the genetic code.
关于早期进化中氨基酸出现时间顺序的40种不同单因素标准和多因素假设在共识排名中进行了总结。因此,关于遗传密码起源和进化的所有现有知识和想法都被整合在一个单一列表中,其中氨基酸按时间顺序排列。由于时间顺序的共识性质,它具有一些在任何初始标准的单独排名中都不可见的重要属性。米勒对原始环境的模拟中得到的9种氨基酸都被排在最前面(甘氨酸、丙氨酸、缬氨酸、天冬氨酸、谷氨酸、脯氨酸、丝氨酸、亮氨酸、苏氨酸)。即使在计算中排除了几个与米勒数据相关的标准后,这个结果也没有改变。20种氨基酸在进化过程中出现的共识顺序还揭示了64个密码子独特且极其简单的时间组织方式,这是从单独标准中无法得出的:新密码子以其热稳定性的降序出现,作为互补对,其互补序列从较早或同时出现的氨基酸的密码子库中依次招募。这三条规则(热稳定性、互补性和连续性)严格适用,同时也体现了米勒所提出的最早氨基酸的主导地位。氨基酸的共识时间顺序,即甘氨酸/丙氨酸、缬氨酸/天冬氨酸、脯氨酸、丝氨酸、谷氨酸/亮氨酸、苏氨酸、精氨酸、天冬酰胺、赖氨酸、谷氨酰胺、异亮氨酸、半胱氨酸、组氨酸、苯丙氨酸、甲硫氨酸、酪氨酸、色氨酸,以及由此推导的密码子时间顺序,因此可以作为进一步研究遗传密码起源和进化的合理选择工作模型。