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基于第一原理的三联体密码。

The triplet code from first principles.

作者信息

Trifonov E N

机构信息

Genome Diversity Center, Institute of Evolution, University of Haifa, Haifa 31905, Israel.

出版信息

J Biomol Struct Dyn. 2004 Aug;22(1):1-11. doi: 10.1080/07391102.2004.10506975.

Abstract

Temporal order ("chronology") of appearance of amino acids and their respective codons on evolutionary scene is reconstructed. A consensus chronology of amino acids is built on the basis of 60 different criteria each offering certain temporal order. After several steps of filtering the chronology vectors are averaged resulting in the consensus order: G, A, D, V, P, S, E, (L, T), R, (I, Q, N), H, K, C, F, Y, M, W. It reveals two important features: the amino acids synthesized in imitation experiments of S. Miller appeared first, while the amino acids associated with codon capture events came last. The reconstruction of codon chronology is based on the above consensus temporal order of amino acids, supplemented by the stability and complementarity rules first suggested by M. Eigen and P. Schuster, and on the earlier established processivity rule. At no point in the reconstruction the consensus amino-acid chronology was in conflict with these three rules. The derived genealogy of all 64 codons suggested several important predictions that are confirmed. The reconstruction of the origin and evolutionary history of the triplet code becomes, thus, a powerful research tool for molecular evolution studies, especially in its early stages.

摘要

氨基酸及其各自密码子在进化过程中出现的时间顺序(“年表”)得以重建。基于60种不同标准构建了氨基酸的一致年表,每种标准都提供了特定的时间顺序。经过几步筛选后,对年表向量进行平均,得出一致顺序:G、A、D、V、P、S、E、(L、T)、R、(I、Q、N)、H、K、C、F、Y、M、W。它揭示了两个重要特征:在S. Miller模拟实验中合成的氨基酸最先出现,而与密码子捕获事件相关的氨基酸最后出现。密码子年表的重建基于上述氨基酸的一致时间顺序,并辅以M. Eigen和P. Schuster首先提出的稳定性和互补性规则,以及早期确立的持续性规则。在重建过程中的任何时候,一致的氨基酸年表都与这三条规则不冲突。所有64个密码子的推导谱系提出了几个得到证实的重要预测。因此,三联体密码起源和进化历史的重建成为分子进化研究,尤其是早期阶段研究的有力工具。

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