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生命起源早期RNA世界中的嘌呤化学:从RNA和核碱基损伤到当前关键代谢途径

Purine Chemistry in the Early RNA World at the Origins of Life: From RNA and Nucleobases Lesions to Current Key Metabolic Routes.

作者信息

Décout Jean-Luc, Maurel Marie-Christine

机构信息

Département de Pharmacochimie Moléculaire, UMR 5063, Université Grenoble Alpes, CNRS, Faculté de Pharmacie, 38000, Grenoble, France.

Institut de Systématique, Evolution, Biodiversité (ISyEB), UMR 7205, CNRS, Muséum National d'Histoire Naturelle, Sorbonne Université, 75005, Paris, France.

出版信息

Chembiochem. 2025 Jun 3;26(11):e202500035. doi: 10.1002/cbic.202500035. Epub 2025 Apr 16.

Abstract

In early life, RNA probably played the central role and, in the corresponding RNA world, the main produced amino acids and small peptides had to react continuously with RNA, ribonucleos(t)ides and nucleobases, especially with purines. A RNA-peptide world and key metabolic pathways have emerged from the corresponding chemical modifications such as the translation process performed by the ribosome. Some interesting reactions of the purine bicycle and of the corresponding ribonucleos(t)ides are performed under plausible prebiotic conditions and described RNA chemical lesions are reviewed with the prospect to highlight their connection with some major steps of the purine and histidine biosynthetic pathways that are, in an intriguingly way, related through two key metabolites, adenosine 5'-triphosphate and the imidazole ribonucleotide 5-aminoimidazole-4-carboxamide ribonucleotide. Ring-opening reactions of purines stand out as efficient accesses to imidazole ribonucleotides and to formamidopyrimidine (Fapy) ribonucleotides suggesting that biosynthetic pathway' first steps have emerged from RNA and ribonucleos(t)ide damages. Also, are summarized the works on the formation and catalytic properties, under plausible prebiotic conditions, of N6-derivatives of the purine base adenine as potential surrogates of histidine in catalysis accordingly to their structural relationship.

摘要

在生命早期,RNA可能发挥了核心作用,在相应的RNA世界中,主要产生的氨基酸和小肽必须不断地与RNA、核糖核苷(酸)和核碱基反应,尤其是与嘌呤反应。通过核糖体进行的翻译过程等相应的化学修饰产生了一个RNA-肽世界和关键的代谢途径。嘌呤环和相应核糖核苷(酸)的一些有趣反应是在合理的益生元条件下进行的,本文综述了所描述的RNA化学损伤,以期突出它们与嘌呤和组氨酸生物合成途径的一些主要步骤的联系,这两条途径通过两种关键代谢物,即5'-三磷酸腺苷和咪唑核糖核苷酸5-氨基咪唑-4-甲酰胺核糖核苷酸,以一种有趣的方式相关联。嘌呤的开环反应是生成咪唑核糖核苷酸和甲酰胺嘧啶(Fapy)核糖核苷酸的有效途径,这表明生物合成途径的第一步源于RNA和核糖核苷(酸)的损伤。此外,根据嘌呤碱基腺嘌呤的N6衍生物在催化中的结构关系,总结了在合理的益生元条件下其作为组氨酸潜在替代物的形成和催化性质的研究工作。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5893/12135143/5d7a165c63c0/CBIC-26-e202500035-g003.jpg

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