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一种从U6小核仁RNA变体中筛选出的核酶可促进2',5'-分支的形成。

A ribozyme selected from variants of U6 snRNA promotes 2',5'-branch formation.

作者信息

Tuschl T, Sharp P A, Bartel D P

机构信息

Department of Biology, Massachusetts Institute of Technology, Cambridge 02139, USA.

出版信息

RNA. 2001 Jan;7(1):29-43. doi: 10.1017/s1355838201001510.

Abstract

In vitro selection was used to sample SnRNA-related sequences for ribozyme activities, and several 2',5'-branch-forming ribozymes were isolated. One such ribozyme is highly dependent upon an 11-nt motif that contains a conserved U6 snRNA sequence (ACAGAGA-box) known to be important for pre-mRNA splicing. The ribozyme reaction is similar to the first step of splicing in that an internal 2'-hydroxyl of an unpaired adenosine attacks at the 5'-phosphate of a guanosine. It differs in that the leaving group is diphosphate rather than a 5' exon. The finding that lariat formation can be accomplished by a small RNA with sequences related to U6 snRNA indicates that the RNA available in the spliceosome may be involved in RNA-catalyzed branch formation.

摘要

利用体外筛选来获取具有核酶活性的小核仁RNA(snRNA)相关序列,并分离出了几种能形成2',5'-分支的核酶。其中一种核酶高度依赖于一个11个核苷酸的基序,该基序包含一个保守的U6 snRNA序列(ACAGAGA框),已知该序列对前体mRNA剪接很重要。核酶反应与剪接的第一步类似,即未配对腺苷的内部2'-羟基攻击鸟苷的5'-磷酸。不同之处在于离去基团是二磷酸而不是5'外显子。与U6 snRNA相关序列的小RNA能够完成套索状结构的形成,这一发现表明剪接体中可用的RNA可能参与了RNA催化的分支形成。

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本文引用的文献

1
Functional interactions of Prp8 with both splice sites at the spliceosomal catalytic center.
Genes Dev. 1999 Aug 1;13(15):1983-93. doi: 10.1101/gad.13.15.1983.
3
The human Prp8 protein is a component of both U2- and U12-dependent spliceosomes.
RNA. 1999 Jul;5(7):893-908. doi: 10.1017/s1355838299990520.
4
Metal ion catalysis during group II intron self-splicing: parallels with the spliceosome.
Genes Dev. 1999 Jul 1;13(13):1729-41. doi: 10.1101/gad.13.13.1729.
5
More mistakes by T7 RNA polymerase at the 5' ends of in vitro-transcribed RNAs.
RNA. 1999 May;5(5):618-21. doi: 10.1017/s1355838299982328.
7
Serine-arginine (SR)-rich splicing factors have an exon-independent function in pre-mRNA splicing.
Proc Natl Acad Sci U S A. 1999 Mar 16;96(6):2651-5. doi: 10.1073/pnas.96.6.2651.
9

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