Awasthi S K, Shankaramma S C, Raghothama S, Balaram P
Molecular Biophysics Unit, Indian Institute of Science, Bangalore 560 012, India.
Biopolymers. 2001 Apr 15;58(5):465-76. doi: 10.1002/1097-0282(20010415)58:5<465::AID-BIP1022>3.0.CO;2-T.
An octapeptide containing a central -Aib-Gly- segment capable of adopting beta-turn conformations compatible with both hairpin (beta(II') or beta(I')) and helical (beta(I)) structures has been designed. The effect of solvent on the conformation of the peptide Boc-Leu-Val-Val-Aib-Gly-Leu-Val-Val-OMe (VIII; Boc: t-butyloxycarbonyl; OMe: methyl ester) has been investigated by NMR and CD spectroscopy. Peptide VIII adopts a well-defined beta-hairpin conformation in solvents capable of hydrogen bonding like (CD(3))(2)SO and CD(3)OH. In solvents that have a lower tendency to interact with backbone peptide groups, like CDCl(3) and CD(3)CN, helical conformations predominate. Nuclear Overhauser effects between the backbone protons and solvent shielding of NH groups involved in cross-strand hydrogen bonding, backbone chemical shifts, and vicinal coupling constants provide further support for the conformational assignments in different solvents. Truncated peptides Boc-Val-Val-Aib-Gly-Leu-Val-Val-OMe (VII), Boc-Val-Val-Aib-Gly-Leu-Val-OMe (VI), and Boc-Val-Aib-Gly-Leu-OMe (IV) were studied in CDCl(3) and (CD(3))(2)SO by 500 MHz (1)H-NMR spectroscopy. Peptides IV and VI show no evidence for hairpin conformation in both the solvents. The three truncated peptides show a well-defined helical conformation in CDCl(3). In (CD(3))(2)SO, peptide VII adopts a beta-hairpin conformation. The results establish that peptides may be designed, which are poised to undergo a dramatic conformational transition.
设计了一种八肽,其含有一个中心-Aib-Gly-片段,该片段能够形成与发夹结构(β(II')或β(I'))和螺旋结构(β(I))兼容的β-转角构象。通过核磁共振(NMR)和圆二色光谱(CD)研究了溶剂对肽Boc-Leu-Val-Val-Aib-Gly-Leu-Val-Val-OMe(VIII;Boc:叔丁氧羰基;OMe:甲酯)构象的影响。在能够形成氢键的溶剂如(CD(3))(2)SO和CD(3)OH中,肽VIII采用明确的β-发夹构象。在与肽主链基团相互作用倾向较低的溶剂如CDCl(3)和CD(3)CN中,螺旋构象占主导。主链质子之间的核Overhauser效应以及参与跨链氢键的NH基团的溶剂屏蔽、主链化学位移和邻位耦合常数为不同溶剂中的构象归属提供了进一步支持。通过500 MHz (1)H-NMR光谱在CDCl(3)和(CD(3))(2)SO中研究了截短肽Boc-Val-Val-Aib-Gly-Leu-Val-Val-OMe(VII)、Boc-Val-Val-Aib-Gly-Leu-Val-OMe(VI)和Boc-Val-Aib-Gly-Leu-OMe(IV)。在这两种溶剂中,肽IV和VI均未显示出发夹构象的证据。这三种截短肽在CDCl(3)中呈现明确的螺旋构象。在(CD(3))(2)SO中,肽VII采用β-发夹构象。结果表明,可以设计出能够发生显著构象转变的肽。