Metrano Anthony J, Abascal Nadia C, Mercado Brandon Q, Paulson Eric K, Hurtley Anna E, Miller Scott J
Department of Chemistry, Yale University , P.O. Box 208107, New Haven, Connecticut 06520-8107, United States.
J Am Chem Soc. 2017 Jan 11;139(1):492-516. doi: 10.1021/jacs.6b11348. Epub 2016 Dec 28.
X-ray crystallography has been applied to the structural analysis of a series of tetrapeptides that were previously assessed for catalytic activity in an atroposelective bromination reaction. Common to the series is a central Pro-Xaa sequence, where Pro is either l- or d-proline, which was chosen to favor nucleation of canonical β-turn secondary structures. Crystallographic analysis of 35 different peptide sequences revealed a range of conformational states. The observed differences appear not only in cases where the Pro-Xaa loop-region is altered, but also when seemingly subtle alterations to the flanking residues are introduced. In many instances, distinct conformers of the same sequence were observed, either as symmetry-independent molecules within the same unit cell or as polymorphs. Computational studies using DFT provided additional insight into the analysis of solid-state structural features. Select X-ray crystal structures were compared to the corresponding solution structures derived from measured proton chemical shifts, J-values, and H-H-NOESY contacts. These findings imply that the conformational space available to simple peptide-based catalysts is more diverse than precedent might suggest. The direct observation of multiple ground state conformations for peptides of this family, as well as the dynamic processes associated with conformational equilibria, underscore not only the challenge of designing peptide-based catalysts, but also the difficulty in predicting their accessible transition states. These findings implicate the advantages of low-barrier interconversions between conformations of peptide-based catalysts for multistep, enantioselective reactions.
X射线晶体学已应用于一系列四肽的结构分析,这些四肽先前已在对映选择性溴化反应中评估了催化活性。该系列的共同特征是一个中心Pro-Xaa序列,其中Pro为L-或D-脯氨酸,选择该序列是为了有利于典型β-转角二级结构的成核。对35种不同肽序列的晶体学分析揭示了一系列构象状态。观察到的差异不仅出现在Pro-Xaa环区域发生改变的情况下,而且当对侧翼残基进行看似细微的改变时也会出现。在许多情况下,观察到相同序列的不同构象异构体,它们要么作为同一晶胞内的非对称独立分子,要么作为多晶型物。使用密度泛函理论(DFT)的计算研究为固态结构特征的分析提供了更多见解。将选定的X射线晶体结构与从测量的质子化学位移、J值和H-H-NOESY接触中得出的相应溶液结构进行了比较。这些发现表明,基于简单肽的催化剂可利用的构象空间比以往的情况更为多样。对该家族肽的多个基态构象以及与构象平衡相关的动态过程的直接观察,不仅突出了设计基于肽的催化剂的挑战,也凸显了预测其可及过渡态的困难。这些发现暗示了基于肽的催化剂构象之间低势垒相互转化对于多步对映选择性反应的优势。