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里氏木霉乙酰木聚糖酯酶催化核心的三维结构:对脱乙酰化机制的见解

Three-dimensional structure of the catalytic core of acetylxylan esterase from Trichoderma reesei: insights into the deacetylation mechanism.

作者信息

Hakulinen N, Tenkanen M, Rouvinen J

机构信息

Department of Chemistry, University of Joensuu, FIN-80101 Joensuu, Finland.

出版信息

J Struct Biol. 2000 Dec;132(3):180-90. doi: 10.1006/jsbi.2000.4318.

Abstract

Acetylxylan esterase from Trichoderma reesei removes acetyl side groups from xylan. The crystal structure of the catalytic core of the enzyme was solved at 1.9 A resolution. The core has an alpha/beta/alpha sandwich fold, similar to that of homologous acetylxylan esterase from Penicillium purpurogenum and cutinase from Fusarium solani. All three enzymes belong to family 5 of the carbohydrate esterases and the superfamily of the alpha/beta hydrolase fold. Evidently, the enzymes have diverged from a common ancestor and they share the same catalytic mechanism. The catalytic machinery of acetylxylan esterase from T. reesei was studied by comparison with cutinase, the catalytic site of which is well known. Acetylxylan esterase is a pure serine esterase having a catalytic triad (Ser90, His187, and Asp175) and an oxyanion hole (Thr13 N, and Thr13 O gamma). Although the catalytic triad of acetylxylan esterase has been reported previously, there has been no mention of the oxyanion hole. A model for the binding of substrates is presented on the basis of the docking of xylose. Acetylxylan esterase from T. reesei is able to deacetylate both mono- and double-acetylated residues, but it is not able to remove acetyl groups located close to large side groups such as 4-O-methylglucuronic acid. If the xylopyranoside residue is double-acetylated, both acetyl groups are removed by the catalytic triad: first one acetyl group is removed and then the residue is reorientated so that the nucleophilic oxygen of serine can attack the second acetyl group.

摘要

里氏木霉的乙酰木聚糖酯酶可去除木聚糖上的乙酰侧基。该酶催化核心的晶体结构以1.9埃的分辨率解析出来。其核心具有α/β/α三明治折叠结构,与来自产紫青霉的同源乙酰木聚糖酯酶以及茄病镰刀菌的角质酶类似。这三种酶均属于碳水化合物酯酶家族5以及α/β水解酶折叠超家族。显然,这些酶由一个共同的祖先分化而来,且具有相同的催化机制。通过与角质酶(其催化位点已知)对比,对里氏木霉乙酰木聚糖酯酶的催化机制进行了研究。乙酰木聚糖酯酶是一种纯丝氨酸酯酶,具有催化三联体(Ser90、His187和Asp175)以及一个氧阴离子洞(Thr13 N和Thr13 Oγ)。尽管乙酰木聚糖酯酶的催化三联体此前已有报道,但氧阴离子洞却未被提及。基于木糖对接结果,提出了底物结合模型。里氏木霉的乙酰木聚糖酯酶能够使单乙酰化和双乙酰化残基脱乙酰,但无法去除靠近大的侧基(如4 - O - 甲基葡萄糖醛酸)的乙酰基团。如果吡喃木糖苷残基是双乙酰化的,两个乙酰基团都会被催化三联体去除:首先去除一个乙酰基团,然后残基重新定向,使得丝氨酸的亲核氧能够攻击第二个乙酰基团。

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