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角质酶丝氨酸42侧链对氧负离子过渡态稳定性的贡献。

Contribution of cutinase serine 42 side chain to the stabilization of the oxyanion transition state.

作者信息

Nicolas A, Egmond M, Verrips C T, de Vlieg J, Longhi S, Cambillau C, Martinez C

机构信息

Laboratoire de Cristallographie et Cristallisation des Macromolécules Biologiques, URA1296-CNRS, IFR1, Marseille, France.

出版信息

Biochemistry. 1996 Jan 16;35(2):398-410. doi: 10.1021/bi9515578.

DOI:10.1021/bi9515578
PMID:8555209
Abstract

Cutinase from the fungus Fusarium solani pisi is a lipolytic enzyme able to hydrolyze both aggregated and soluble substrates. It therefore provides a powerful tool for probing the mechanisms underlying lipid hydrolysis. Lipolytic enzymes have a catalytic machinery similar to those present in serine proteinases. It is characterized by the triad Ser, His, and Asp (Glu) residues, by an oxyanion binding site that stabilizes the transition state via hydrogen bonds with two main chain amide groups, and possibly by other determinants. It has been suggested on the basis of a covalently bond inhibitor that the cutinase oxyanion hole may consist not only of two main chain amide groups but also of the Ser42 O gamma side chain. Among the esterases and the serine and the cysteine proteases, only Streptomyces scabies esterase, subtilisin, and papain, respectively, have a side chain residue which is involved in the oxyanion hole formation. The position of the cutinase Ser42 side chain is structurally conserved in Rhizomucor miehei lipase with Ser82 O gamma, in Rhizopus delemar lipase with Thr83 O gamma 1, and in Candida antartica B lipase with Thr40 O gamma 1. To evaluate the increase in the tetrahedral intermediate stability provided by Ser42 O gamma, we mutated Ser42 into Ala. Furthermore, since the proper orientation of Ser42 O gamma is directed by Asn84, we mutated Asn84 into Ala, Leu, Asp, and Trp, respectively, to investigate the contribution of this indirect interaction to the stabilization of the oxyanion hole. The S42A mutation resulted in a drastic decrease in the activity (450-fold) without significantly perturbing the three-dimensional structure. The N84A and N84L mutations had milder kinetic effects and did not disrupt the structure of the active site, whereas the N84W and N84D mutations abolished the enzymatic activity due to drastic steric and electrostatic effects, respectively.

摘要

来自真菌豌豆镰孢菌的角质酶是一种脂解酶,能够水解聚集态和可溶性底物。因此,它为探究脂质水解的潜在机制提供了一个强大的工具。脂解酶具有与丝氨酸蛋白酶中相似的催化机制。其特征在于由丝氨酸(Ser)、组氨酸(His)和天冬氨酸(Asp,谷氨酸(Glu))残基组成的三联体,一个通过与两个主链酰胺基团形成氢键来稳定过渡态的氧负离子结合位点,以及可能的其他决定因素。基于一种共价键抑制剂,有人提出角质酶的氧负离子孔可能不仅由两个主链酰胺基团组成,还包括Ser42的Oγ侧链。在酯酶、丝氨酸蛋白酶和半胱氨酸蛋白酶中,分别只有疮痂链霉菌酯酶、枯草杆菌蛋白酶和木瓜蛋白酶具有参与氧负离子孔形成的侧链残基。角质酶Ser42侧链的位置在米黑根毛霉脂肪酶中与Ser82的Oγ结构保守,在德氏根霉脂肪酶中与Thr83的Oγ1结构保守,在南极假丝酵母B脂肪酶中与Thr40的Oγ1结构保守。为了评估Ser42的Oγ对四面体中间体稳定性增加的作用,我们将Ser42突变为丙氨酸(Ala)。此外,由于Ser42的Oγ的正确取向由天冬酰胺(Asn)84引导,我们分别将Asn84突变为Ala、亮氨酸(Leu)、天冬氨酸(Asp)和色氨酸(Trp),以研究这种间接相互作用对氧负离子孔稳定性的贡献。S42A突变导致活性急剧下降(450倍),而没有显著扰乱三维结构。N84A和N84L突变具有较温和的动力学效应,并且没有破坏活性位点的结构,而N84W和N84D突变分别由于严重的空间位阻和静电效应而使酶活性丧失。

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