Xiang J, Sun J, Sampson N S
Department of Chemistry, State University of New York, Stony Brook, NY, 11794-3400, USA.
J Mol Biol. 2001 Apr 6;307(4):1103-12. doi: 10.1006/jmbi.2001.4536.
We have determined the sequence requirements for the N-terminal protein hinge of the active-site lid of triosephosphate isomerase. The codons for the hinge (PVW) were replaced with a genetic library of all possible 8000 amino acid combinations. The most active of these 8000 mutants were selected using in vivo complementation of a triosephosphate isomerase-deficient strain of Escherichia coli, DF502. Approximately 0.3 % of the mutants complement DF502 with an activity that is between 10 and 70 % of wild-type activity. They all contain Pro at the first position. Furthermore, the sequences of these hinge mutants reveal that hydrophobic packing is very important for efficient formation of the enediol intermediate. However, the reduced catalytic activities observed are not due to increased rates of loop opening. To explore the relationship between the N-terminal and C-terminal hinges, three semi-active mutants from the N-terminal hinge selection experiment (PLH, PHS and PTF), and six active C-terminal hinge mutants from previous work (NSS, LWA, YSL, KTK, NPN, KVA) were combined to form 18 "double-hinge" mutants. The activities of these mutants suggest that the N-terminal and C-terminal hinge structures affect one another. It appears that specific side-chain interactions are important for forming a catalytically active enzyme, but not for preventing release of the unstable enediol intermediate from the active site of the enzyme. The independence of intermediate release on amino acid sequence is consistent with the absence of a "universal" hinge sequence in structurally related enzymes.
我们已经确定了磷酸丙糖异构酶活性位点盖子的N端蛋白质铰链的序列要求。铰链(PVW)的密码子被替换为包含所有8000种可能氨基酸组合的基因文库。使用大肠杆菌磷酸丙糖异构酶缺陷菌株DF502的体内互补筛选出这8000个突变体中活性最高的。大约0.3%的突变体能互补DF502,其活性为野生型活性的10%至70%。它们在第一位均含有脯氨酸。此外,这些铰链突变体的序列表明,疏水堆积对于烯二醇中间体的有效形成非常重要。然而,观察到的催化活性降低并非由于环打开速率增加。为了探究N端和C端铰链之间的关系,将N端铰链筛选实验中的三个半活性突变体(PLH、PHS和PTF)与之前工作中的六个活性C端铰链突变体(NSS、LWA、YSL、KTK、NPN、KVA)组合,形成18个“双铰链”突变体。这些突变体的活性表明,N端和C端铰链结构相互影响。似乎特定的侧链相互作用对于形成具有催化活性的酶很重要,但对于防止不稳定的烯二醇中间体从酶的活性位点释放并不重要。中间体释放对氨基酸序列的独立性与结构相关酶中不存在“通用”铰链序列一致。