猪链球菌不同血清型中SsuDAT1I限制修饰系统的分布
Distribution of the SsuDAT1I restriction-modification system among different serotypes of Streptococcus suis.
作者信息
Sekizaki T, Osaki M, Takamatsu D, Shimoji Y
机构信息
National Institute of Animal Health, Tsukuba, Ibaraki, Japan.
出版信息
J Bacteriol. 2001 Sep;183(18):5436-40. doi: 10.1128/JB.183.18.5436-5440.2001.
Abstract
The SsuDAT1I restriction-modification (R-M) system, which contains two methyltransferases and two restriction endonucleases with recognition sequence 5'-GATC-3', was first found in a field isolate of Streptococcus suis serotype 2. Isoschizomers of the R-M system were found in the same locus between purH and purD in a field isolate of serotype 1/2 and the reference strains of serotypes 3, 7, 23, and 26 among 29 strains of different serotypes examined in this study. The R-M gene sequences in serotypes 1/2, 3, 7, and 23 were very similar to those of SsuDAT1I, whereas those in serotype 26 were less similar. These results indicate intraspecies recombination among them and genetic divergence through their evolution.
摘要
SsuDAT1I 限制修饰（R-M）系统包含两种甲基转移酶和两种识别序列为 5'-GATC-3' 的限制性内切酶，该系统最初在猪链球菌 2 型的一株田间分离株中发现。在本研究检测的 29 株不同血清型菌株中，在血清型 1/2 的一株田间分离株以及血清型 3、7、23 和 26 的参考菌株中，于 purH 和 purD 之间的同一基因座发现了该 R-M 系统的同裂酶。血清型 1/2、3、7 和 23 中的 R-M 基因序列与 SsuDAT1I 的序列非常相似，而血清型 26 中的序列相似性较低。这些结果表明它们之间存在种内重组以及在进化过程中的遗传分化。
相似文献
1
Distribution of the SsuDAT1I restriction-modification system among different serotypes of Streptococcus suis.猪链球菌不同血清型中SsuDAT1I限制修饰系统的分布
J Bacteriol. 2001 Sep;183(18):5436-40. doi: 10.1128/JB.183.18.5436-5440.2001.
2
Evidence for horizontal transfer of SsuDAT1I restriction-modification genes to the Streptococcus suis genome.SsuDAT1I限制修饰基因向猪链球菌基因组水平转移的证据。
J Bacteriol. 2001 Jan;183(2):500-11. doi: 10.1128/JB.183.2.500-511.2001.
3
Determining Streptococcus suis serotype from short-read whole-genome sequencing data.通过短读长全基因组测序数据确定猪链球菌血清型
BMC Microbiol. 2016 Jul 22;16(1):162. doi: 10.1186/s12866-016-0782-8.
4
Rapid PCR test for Streptococcus suis serotype 7.猪链球菌7型快速聚合酶链反应检测
FEMS Microbiol Lett. 1999 Sep 15;178(2):265-70. doi: 10.1111/j.1574-6968.1999.tb08686.x.
5
The cps genes of Streptococcus suis serotypes 1, 2, and 9: development of rapid serotype-specific PCR assays.猪链球菌1型、2型和9型的cps基因：快速血清型特异性PCR检测方法的建立
J Clin Microbiol. 1999 Oct;37(10):3146-52. doi: 10.1128/JCM.37.10.3146-3152.1999.
6
Development of rapid serotype-specific PCR assays for eight serotypes of Streptococcus suis.快速血清型特异性 PCR 检测方法用于检测八种血清型猪链球菌。
J Clin Microbiol. 2012 Oct;50(10):3329-34. doi: 10.1128/JCM.01584-12. Epub 2012 Aug 8.
7
Different foreign genes incidentally integrated into the same locus of the Streptococcus suis genome.不同的外源基因偶然整合到猪链球菌基因组的同一基因座中。
J Bacteriol. 2005 Feb;187(3):872-83. doi: 10.1128/JB.187.3.872-883.2005.
8
Streptococcus suis serotyping by a new multiplex PCR.应用新多重 PCR 对猪链球菌进行血清型分型。
J Med Microbiol. 2014 Jun;63(Pt 6):824-830. doi: 10.1099/jmm.0.069757-0. Epub 2014 Apr 2.
9
Genetic analysis of the capsular polysaccharide synthesis locus in 15 Streptococcus suis serotypes.15 种猪链球菌血清型荚膜多糖合成基因座的遗传分析。
FEMS Microbiol Lett. 2011 Nov;324(2):117-24. doi: 10.1111/j.1574-6968.2011.02394.x. Epub 2011 Sep 20.
10
Genetic analysis of capsular polysaccharide synthesis gene clusters from all serotypes of Streptococcus suis: potential mechanisms for generation of capsular variation.对所有血清型猪链球菌荚膜多糖合成基因簇的遗传分析：荚膜变异产生的潜在机制。
Appl Environ Microbiol. 2013 Apr;79(8):2796-806. doi: 10.1128/AEM.03742-12. Epub 2013 Feb 15.
引用本文的文献
1
A Locus Encoding Variable Defense Systems against Invading DNA Identified in Streptococcus suis.在猪链球菌中鉴定出一个编码针对入侵DNA的可变防御系统的基因座。
Genome Biol Evol. 2017 Apr 1;9(4):1000-1012. doi: 10.1093/gbe/evx062.
2
Distribution of Type I Restriction-Modification Systems in Streptococcus suis: An Outlook.猪链球菌中I型限制修饰系统的分布：展望
Pathogens. 2016 Nov 18;5(4):62. doi: 10.3390/pathogens5040062.
3
Conservation of genomic localization and sequence content of Sau3AI-like restriction-modification gene cassettes among Listeria monocytogenes epidemic clone I and selected strains of serotype 1/2a.在单核细胞增生李斯特氏菌流行克隆 I 和选定的 1/2a 血清型菌株中，Sau3AI 样限制修饰基因盒的基因组定位和序列内容的保守性。
Appl Environ Microbiol. 2010 Aug;76(16):5577-84. doi: 10.1128/AEM.00648-10. Epub 2010 Jun 25.
4
Different foreign genes incidentally integrated into the same locus of the Streptococcus suis genome.不同的外源基因偶然整合到猪链球菌基因组的同一基因座中。
J Bacteriol. 2005 Feb;187(3):872-83. doi: 10.1128/JB.187.3.872-883.2005.
5
Evidence for lateral transfer of the Suilysin gene region of Streptococcus suis.猪链球菌溶素基因区域横向转移的证据。
J Bacteriol. 2002 Apr;184(7):2050-7. doi: 10.1128/JB.184.7.2050-2057.2002.
本文引用的文献
1
Comparison between Pyrococcus horikoshii and Pyrococcus abyssi genome sequences reveals linkage of restriction-modification genes with large genome polymorphisms.嗜热栖热球菌与深渊嗜热栖热菌基因组序列的比较揭示了限制修饰基因与大基因组多态性的联系。
Gene. 2000 Dec 23;259(1-2):109-21. doi: 10.1016/s0378-1119(00)00459-5.
2
Insertion with long target duplication: a mechanism for gene mobility suggested from comparison of two related bacterial genomes.伴有长末端重复序列的插入：通过比较两个相关细菌基因组提出的一种基因移动机制。
Gene. 2000 Dec 23;259(1-2):99-108. doi: 10.1016/s0378-1119(00)00456-x.
3
Diversity of restriction-modification gene homologues in Helicobacter pylori.幽门螺杆菌中限制修饰基因同源物的多样性
Gene. 2000 Dec 23;259(1-2):89-98. doi: 10.1016/s0378-1119(00)00455-8.
4
Relatedness of Streptococcus suis isolates of various serotypes and clinical backgrounds as evaluated by macrorestriction analysis and expression of potential virulence traits.通过宏观限制性分析和潜在毒力特征表达评估不同血清型和临床背景的猪链球菌分离株的相关性。
J Clin Microbiol. 2001 Feb;39(2):445-53. doi: 10.1128/JCM.39.2.445-453.2001.
5
Evidence for horizontal transfer of SsuDAT1I restriction-modification genes to the Streptococcus suis genome.SsuDAT1I限制修饰基因向猪链球菌基因组水平转移的证据。
J Bacteriol. 2001 Jan;183(2):500-11. doi: 10.1128/JB.183.2.500-511.2001.
6
REBASE--restriction enzymes and methylases.REBASE——限制性内切酶和甲基化酶。
Nucleic Acids Res. 2001 Jan 1;29(1):268-9. doi: 10.1093/nar/29.1.268.
7
Purification of the novel endonuclease, Hpy188I, and cloning of its restriction-modification genes reveal evidence of its horizontal transfer to the Helicobacter pylori genome.新型核酸内切酶Hpy188I的纯化及其限制修饰基因的克隆揭示了其向幽门螺杆菌基因组水平转移的证据。
J Biol Chem. 2000 Jun 2;275(22):17086-93. doi: 10.1074/jbc.M910303199.
8
Differential distribution of novel restriction-modification systems in clonal lineages of Neisseria meningitidis.新型限制修饰系统在脑膜炎奈瑟菌克隆谱系中的差异分布。
J Bacteriol. 2000 Mar;182(5):1296-303. doi: 10.1128/JB.182.5.1296-1303.2000.
9
Shaping the genome--restriction-modification systems as mobile genetic elements.塑造基因组——作为可移动遗传元件的限制修饰系统
Curr Opin Genet Dev. 1999 Dec;9(6):649-56. doi: 10.1016/s0959-437x(99)00026-x.
10
Sequence analysis of a small cryptic plasmid isolated from Streptococcus suis serotype 2.从猪链球菌2型分离出的一个小隐秘质粒的序列分析
Curr Microbiol. 2000 Jan;40(1):61-6. doi: 10.1007/s002849910012.
Zotero 插件