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嗜热栖热菌单链DNA结合蛋白的过表达、纯化、结晶及数据收集

Overexpression, purification, crystallization and data collection of a single-stranded DNA-binding protein from Sulfolobus solfataricus.

作者信息

Kerr I D, Wadsworth R I, Blankenfeldt W, Staines A G, White M F, Naismith J H

机构信息

The Centre for Biomolecular Sciences, The University, St Andrews KY16 9ST, Scotland.

出版信息

Acta Crystallogr D Biol Crystallogr. 2001 Sep;57(Pt 9):1290-2. doi: 10.1107/s0907444901011374. Epub 2001 Aug 23.

Abstract

Single-stranded DNA-binding proteins are recruited when single-stranded DNA is exposed by disruption of the duplex. Many important biological processes such as DNA replication can only occur when the two strands of the duplex are separated. A defining trait of these proteins is the presence of the so-called OB fold. The single-stranded DNA-binding protein of the crenarchaeote Sulfolobus solfataricus has a number of interesting differences and similarities to both the eubacterial and eukaryotic homologues. It has an extended C-terminal tail with significant sequence identity to a similar region in the eubacterial protein. However, the sequence of the OB fold is much more like the eukaryotic and euryarchaeal proteins. The S. solfataricus protein remains a monomer in the absence of DNA but rapidly polymerizes upon binding - a behaviour not seen in the Escherichia coli protein. The protein has been overexpressed, purified and crystallized. The protein crystallizes in two related forms, both having space group P6(1) (or P6(5)) with approximate unit-cell parameters a = b = 75, c = 69 A, but the crystals are distinguished by their size and morphology. The larger crystals are hexagonal bipyramids and are merohedrally twinned, diffracting to 1.34 A with diffraction observed to 1.2 A. Smaller needle-like crystals diffract to about 2.0 A but are not twinned. Molecular-replacement attempts have failed owing to low identity with available search models. The structure will be determined by multiple-wavelength methods.

摘要

当双链被破坏暴露出单链DNA时,单链DNA结合蛋白就会被招募。许多重要的生物学过程,如DNA复制,只有在双链的两条链分开时才会发生。这些蛋白的一个决定性特征是存在所谓的OB折叠。嗜热栖热菌的单链DNA结合蛋白与真细菌和真核生物的同源物有一些有趣的异同。它有一个延伸的C末端尾巴,与真细菌蛋白的类似区域有显著的序列同一性。然而,OB折叠的序列更类似于真核生物和广古菌的蛋白。嗜热栖热菌蛋白在没有DNA时保持单体状态,但在结合时会迅速聚合——这种行为在大肠杆菌蛋白中未见。该蛋白已被过量表达、纯化并结晶。该蛋白以两种相关形式结晶,两者的空间群均为P6(1)(或P6(5)),近似晶胞参数a = b = 75,c = 69 Å,但晶体在大小和形态上有所不同。较大的晶体是六方双锥体,呈merohedrally孪晶,衍射分辨率为1.34 Å,观察到的衍射分辨率为1.2 Å。较小的针状晶体衍射分辨率约为2.0 Å,但没有孪晶。由于与可用搜索模型的同一性较低,分子置换尝试失败。该结构将通过多波长方法确定。

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