Unit Evolutionary Biology of the Microbial Cell, Department of Microbiology, Institut Pasteur, Paris, France.
Hub Bioinformatics and Biostatistics, Department of Computational Biology, Institut Pasteur, Paris, France.
Methods Mol Biol. 2021;2281:23-47. doi: 10.1007/978-1-0716-1290-3_2.
Single-stranded (ss) DNA-binding proteins are found in all three domains of life where they play vital roles in nearly all aspects of DNA metabolism by binding to and stabilizing exposed ssDNA and acting as platforms onto which DNA-processing activities can assemble. The ssDNA-binding factors SSB and RPA are extremely well conserved across bacteria and eukaryotes, respectively, and comprise one or more OB-fold ssDNA-binding domains. In the third domain of life, the archaea, multiple types of ssDNA-binding protein are found with a variety of domain architectures and subunit compositions, with OB-fold ssDNA-binding domains being a characteristic of most, but not all. This chapter summarizes current knowledge of the distribution, structure, and biological function of the archaeal ssDNA-binding factors, highlighting key features shared between clades and those that distinguish the proteins of different clades from one another. The likely cellular functions of the proteins are discussed and gaps in current knowledge identified.
单链 DNA 结合蛋白存在于生命的三个领域,它们通过与暴露的单链 DNA 结合并稳定其结构,充当 DNA 加工活动的组装平台,从而在 DNA 代谢的几乎所有方面发挥着重要作用。单链 DNA 结合因子 SSB 和 RPA 在细菌和真核生物中分别得到了很好的保守,它们分别包含一个或多个 OB 折叠单链 DNA 结合结构域。在生命的第三个领域——古菌中,发现了多种具有各种结构域架构和亚基组成的单链 DNA 结合蛋白,大多数(但不是全部)都具有 OB 折叠单链 DNA 结合结构域。本章总结了古菌中单链 DNA 结合因子的分布、结构和生物学功能的最新知识,突出了不同进化枝之间的共享特征以及不同进化枝的蛋白质之间的区别。讨论了这些蛋白质的可能细胞功能,并确定了当前知识中的空白。