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在过渡态类似物ADP-氟化铝存在的情况下转录激活因子与σ54的结合:对激活因子机械化学作用的见解

Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action.

作者信息

Chaney M, Grande R, Wigneshweraraj S R, Cannon W, Casaz P, Gallegos M T, Schumacher J, Jones S, Elderkin S, Dago A E, Morett E, Buck M

机构信息

Department of Biology and Biochemistry, Faculty of Life Sciences, Sir Alexander Fleming Building, Imperial College of Science Technology and Medicine, London SW7 2AZ, UK.

出版信息

Genes Dev. 2001 Sep 1;15(17):2282-94. doi: 10.1101/gad.205501.

DOI:10.1101/gad.205501
PMID:11544185
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC312774/
Abstract

Conformational changes in sigma 54 (sigma(54)) and sigma(54)-holoenzyme depend on nucleotide hydrolysis by an activator. We now show that sigma(54) and its holoenzyme bind to the central ATP-hydrolyzing domains of the transcriptional activators PspF and NifA in the presence of ADP-aluminum fluoride, an analog of ATP in the transition state for hydrolysis. Direct binding of sigma(54) Region I to activator in the presence of ADP-aluminum fluoride was shown and inferred from in vivo suppression genetics. Energy transduction appears to occur through activator contacts to sigma(54) Region I. ADP-aluminum fluoride-dependent interactions and consideration of other AAA+ proteins provide insight into activator mechanochemical action.

摘要

σ54(σ(54))及σ54全酶的构象变化取决于激活剂的核苷酸水解作用。我们现在表明,在ADP-氟化铝(一种处于水解过渡态的ATP类似物)存在的情况下,σ54及其全酶与转录激活剂PspF和NifA的中央ATP水解结构域结合。在ADP-氟化铝存在的情况下,σ54区域I与激活剂的直接结合已得到证实,并通过体内抑制遗传学推断得出。能量转导似乎是通过激活剂与σ54区域I的接触发生的。ADP-氟化铝依赖性相互作用以及对其他AAA+蛋白的考虑为激活剂的机械化学作用提供了见解。

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本文引用的文献

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Regulatory sequences in sigma 54 localise near the start of DNA melting.σ54中的调控序列定位于DNA解链起始点附近。
J Mol Biol. 2001 Mar 2;306(4):681-701. doi: 10.1006/jmbi.2000.4393.
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Three-dimensional structure of motor molecules.运动分子的三维结构。
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Protein-protein interactions in the complex between the enhancer binding protein NIFA and the sensor NIFL from Azotobacter vinelandii.来自棕色固氮菌的增强子结合蛋白NIFA与传感器NIFL复合物中的蛋白质-蛋白质相互作用。
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Single amino acid substitution mutants of Klebsiella pneumoniae sigma(54) defective in transcription.肺炎克雷伯菌σ因子(54)中在转录方面存在缺陷的单氨基酸取代突变体。
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Transcription initiation-defective forms of sigma(54) that differ in ability To function with a heteroduplex DNA template.在与异源双链DNA模板发挥功能的能力上存在差异的σ(54)转录起始缺陷形式。
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Promoter opening by sigma(54) and sigma(70) RNA polymerases: sigma factor-directed alterations in the mechanism and tightness of control.由σ(54)和σ(70) RNA聚合酶介导的启动子开放:σ因子对机制和控制严格性的定向改变
Genes Dev. 2000 Sep 1;14(17):2242-55. doi: 10.1101/gad.794800.
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AAA proteins. Lords of the ring.AAA蛋白。环状结构的主宰者。
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