Suppr超能文献

多维分子置换

Multidimensional molecular replacement.

作者信息

Glykos N M, Kokkinidis M

机构信息

IMBB, FORTH, PO Box 1527, 71110 Heraklion, Crete, Greece.

出版信息

Acta Crystallogr D Biol Crystallogr. 2001 Oct;57(Pt 10):1462-73. doi: 10.1107/s0907444901008563. Epub 2001 Sep 21.

Abstract

A method is described which attempts to simultaneously and independently determine the positional and orientational parameters of all molecules present in the asymmetric unit of a target crystal structure. This is achieved through a reverse Monte Carlo optimization of a suitable statistic (such as the R factor or the linear correlation coefficient between the observed and calculated amplitudes of the structure factors) in the 6n-dimensional space defined by the rotational and translational parameters of the n search models. Results from the application of this stochastic method - obtained with a space-group-general computer program which has been developed for this purpose - indicate that with present-day computing capabilities the method may be applied successfully to molecular-replacement problems for which the target crystal structure contains up to three molecules per asymmetric unit. It is also shown that the method may be useful in cases where the assumption of topological segregation of the self- and cross-vectors in the Patterson function is violated (as may happen, for example, in closely packed crystal structures).

摘要

本文描述了一种方法,该方法试图同时独立地确定目标晶体结构不对称单元中所有分子的位置和取向参数。这是通过在由n个搜索模型的旋转和平移参数定义的6n维空间中对合适的统计量(如R因子或结构因子的观测值与计算值振幅之间的线性相关系数)进行反向蒙特卡罗优化来实现的。应用这种随机方法(使用为此目的开发的空间群通用计算机程序获得)的结果表明,以目前的计算能力,该方法可成功应用于目标晶体结构每个不对称单元包含多达三个分子的分子置换问题。还表明,在帕特森函数中自向量和交叉向量的拓扑分离假设被违反的情况下(例如,在紧密堆积的晶体结构中可能发生),该方法可能有用。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验