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包含经典I类基因的猪主要组织相容性区域的序列。

Sequence of the pig major histocompatibility region containing the classical class I genes.

作者信息

Renard C, Vaiman M, Chiannilkulchai N, Cattolico L, Robert C, Chardon P

机构信息

Laboratoire de Radiobiologie et d'Etude du Génome, INRA-CEA, Domaine de Vilvert, 78352 Jouy-en-Josas cedex, France.

出版信息

Immunogenetics. 2001 Aug;53(6):490-500. doi: 10.1007/s002510100348.

Abstract

A segment comprising 307,078 nucleotides of the pig major histocompatibility complex (SLA) was completely sequenced. The segment corresponded to the entire SLA classical class I-containing region of the serologically defined SLA H01 haplotype. In all, 11 genes were characterized, comprising 7 class I genes located on the centromeric part of the sequence (SLA-1, 2, 3, 4, 5, 9, and 11) and 4 ring finger-related family genes located on its telomeric part. No member of one family was intermingled with a member of the other or with any third-party gene. All class I genes except SLA-11 were similarly orientated. The SLA-1, 2, and 3 genes displayed both promoter and overall coding regions compatible with normal functions. The SLA-4, 11, and 9 genes were considered pseudogenes because they exhibited marked anomalies. Although the SLA-5 gene had a complete coding region, it displayed mutations in promoter elements which could modify its expression. The great molecular similarity observed among the class I genes extended far outside them, and resulted from segmental duplications. The ring finger genes exhibited great homology with their human counterparts. In pig, one of these genes appeared to correspond to a complete gene which in humans is probably a pseudogene. In all, the 11 genes characterized span about 20% of the total sequence. The remaining 80% consists of interspersed repeat elements. The present results, together with the sequence previously reported involving the SLA class I-related genes, open the way for a better understanding of pig MHC organization.

摘要

对猪主要组织相容性复合体(SLA)包含307,078个核苷酸的片段进行了全序列测定。该片段对应于血清学定义的SLA H01单倍型中整个含SLA经典I类基因的区域。总共鉴定出11个基因,其中7个I类基因位于序列的着丝粒部分(SLA-1、2、3、4、5、9和11),4个与环指相关的家族基因位于其端粒部分。一个家族的成员没有与另一个家族的成员或任何第三方基因相互混杂。除SLA-11外,所有I类基因的方向相似。SLA-1、2和3基因的启动子和整个编码区均与正常功能兼容。SLA-4、11和9基因被认为是假基因,因为它们表现出明显的异常。尽管SLA-5基因有完整的编码区,但它在启动子元件中存在突变,可能会改变其表达。I类基因之间观察到的高度分子相似性远远超出了它们本身,这是由片段重复导致的。环指基因与其人类对应基因具有高度同源性。在猪中,这些基因之一似乎对应于一个完整的基因,而在人类中它可能是一个假基因。总共,鉴定出的11个基因约占总序列的20%。其余80%由散布的重复元件组成。目前的结果,连同先前报道的涉及SLA I类相关基因的序列,为更好地理解猪MHC组织开辟了道路。

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