Chiaramonte M, Koviach J L, Moore C, Iyer V V, Wagner C R, Halcomb R L, Miller W, Melançon P, Kuchta R D
Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215, USA.
Biochemistry. 2001 Nov 27;40(47):14260-7. doi: 10.1021/bi011262w.
We examined the interactions of nucleotides with the CMP-sialic acid transporter in order to better understand which features play a role in binding and to investigate the relationship between binding and subsequent transport. With respect to the sugar, the transporter requires a complete ribose ring for tight binding, and the 2'-ara hydrogen makes an important contact. The enzyme exhibits little specificity with respect to the 2'- and 3'-hydroxyls, as it tolerated substitutions ranging from fluorine to an azido group. In the base, the C4 amine and C2 carbonyl groups make important contacts, while the N3 nitrogen does not. However, adding a methyl group to N3 dramatically reduced binding, indicating that mass at this position sterically hinders binding. Adding a group at C5 had either no effect or slightly enhanced binding. To determine if the transporter recognizes these CMP analogues as substrates, we assayed them for their ability to trans stimulate CMP-sialic acid import. These data suggest that the enzyme transports a wide variety of NMPs, and the rate of transport is inversely proportional to the K(I) of the analogue. The importance of our findings for understanding the specificities of the different nucleotide-sugar tranlocators and the design of novel glycosylation inhibitors are discussed.
我们研究了核苷酸与CMP-唾液酸转运蛋白的相互作用,以便更好地了解哪些特征在结合中起作用,并研究结合与后续转运之间的关系。关于糖类,转运蛋白需要完整的核糖环才能紧密结合,并且2'-阿拉伯氢形成重要的接触。该酶对2'-和3'-羟基几乎没有特异性,因为它能耐受从氟到叠氮基的各种取代。在碱基中,C4胺和C2羰基形成重要的接触,而N3氮则不然。然而,在N3上添加一个甲基会显著降低结合,表明该位置的质量在空间上阻碍了结合。在C5处添加一个基团要么没有影响,要么略微增强结合。为了确定转运蛋白是否将这些CMP类似物识别为底物,我们检测了它们反式刺激CMP-唾液酸导入的能力。这些数据表明该酶能转运多种NMP,并且转运速率与类似物的K(I)成反比。我们讨论了这些发现对于理解不同核苷酸糖转运体的特异性以及新型糖基化抑制剂设计的重要性。