Xu Hongliang, Hauptman Herbert A, Weeks Charles M
Hauptman-Woodward Medical Research Institute and Department of Structural Biology, School of Medicine and Biomedical Sciences, State University of New York at Buffalo, 73 HighStreet, Buffalo, NY 14203 USA.
Acta Crystallogr D Biol Crystallogr. 2002 Jan;58(Pt 1):90-6. doi: 10.1107/s0907444901017668. Epub 2001 Dec 21.
Shake-and-Bake is a dual-space direct-methods procedure for crystal structure determination capable of providing ab initio solutions for structures containing as many as 1200 independent non-H atoms, as well as for heavy-atom substructures containing as many as 160 Se atoms in the asymmetric unit. In traditional Shake-and-Bake, phase refinement in reciprocal space utilizes the technique of parameter shift to reduce the value of a minimal function that considers only the mean-square differences between the current values of the cosine structure invariants and their expected values. A new type of minimal function, termed the sine-enhanced minimal function, considers both cosine and sine values of the structure invariants. Exhaustive tests on six Se-atom substructures, ranging in size from 12 to 160 Se atoms in the asymmetric unit, have shown that a two- to eightfold increase in the percentage of trials that converge to solution is attainable with the technique of sine-enhanced parameter shift. The corresponding sine-enhanced Shake-and-Bake, with suitable default parameter values, is being incorporated into a new distributed version of the SnB computer program.
“摇晃烘焙法”是一种用于晶体结构测定的双空间直接法程序,能够为含有多达1200个独立非氢原子的结构以及不对称单元中含有多达160个硒原子的重原子子结构提供从头算解决方案。在传统的“摇晃烘焙法”中,倒易空间中的相位精修利用参数移位技术来降低一个最小函数的值,该函数仅考虑余弦结构不变量的当前值与其期望值之间的均方差。一种新型的最小函数,称为正弦增强最小函数,同时考虑了结构不变量的余弦值和正弦值。对六个硒原子子结构进行的详尽测试,其不对称单元中的硒原子数量从12个到160个不等,结果表明,采用正弦增强参数移位技术可使收敛到解的试验百分比提高两到八倍。具有合适默认参数值的相应正弦增强“摇晃烘焙法”正被纳入SnB计算机程序的新分布式版本中。