Nienhaus Karin, Lamb Don C, Deng Pengchi, Nienhaus G Ulrich
Department of Biophysics, University of Ulm, 89069 Ulm, Germany.
Biophys J. 2002 Feb;82(2):1059-67. doi: 10.1016/s0006-3495(02)75465-9.
Band III is a near-infrared electronic transition at ~13,000 cm(-1) in heme proteins that has been studied extensively as a marker of protein conformational relaxation after photodissociation of the heme-bound ligand. To examine the influence of the heme pocket structure and ligand dynamics on band III, we have studied carbon monoxide recombination in a variety of myoglobin mutants after photolysis at 3 K using Fourier transform infrared temperature-derivative spectroscopy with monitoring in three spectral ranges, (1) band III, the mid-infrared region of (2) the heme-bound CO, and (3) the photodissociated CO. Here we present data on mutant myoglobins V68F and L29W, which both exhibit pronounced ligand movements at low temperature. From spectral and kinetic analyses in the mid-infrared, a small number of photoproduct populations can be distinguished, differing in their distal heme pocket conformations and/or CO locations. We have decomposed band III into its individual photoproduct contributions. Each photoproduct state exhibits a different "kinetic hole-burning" (KHB) effect, a coupling of the activation enthalpy for rebinding to the position of band III. The analysis reveals that the heme pocket structure and the photodissociated CO markedly affect the band III transition. A strong kinetic hole-burning effect results only when the CO ligand resides in the docking site on top of the heme group. Migration of CO away from the heme group leads to an overall blue shift of band III. Consequently, band III can be used as a sensitive tool to study ligand dynamics after photodissociation in heme proteins.
带III是血红素蛋白中约13,000 cm⁻¹处的近红外电子跃迁,作为血红素结合配体光解离后蛋白质构象弛豫的标志物,已得到广泛研究。为了研究血红素口袋结构和配体动力学对带III的影响,我们使用傅里叶变换红外温度导数光谱法,在三个光谱范围内进行监测,研究了多种肌红蛋白突变体在3 K光解后的一氧化碳重组,这三个光谱范围分别是:(1)带III、(2)血红素结合的CO的中红外区域以及(3)光解离的CO。本文展示了突变体肌红蛋白V68F和L29W的数据,这两种突变体在低温下均表现出明显的配体移动。通过中红外光谱和动力学分析,可以区分出少量光产物群体,它们在远端血红素口袋构象和/或CO位置上存在差异。我们已将带III分解为其各个光产物的贡献。每个光产物状态都表现出不同的“动力学空穴烧蚀”(KHB)效应,即重新结合的活化焓与带III位置之间的耦合。分析表明,血红素口袋结构和光解离的CO对带III跃迁有显著影响。只有当CO配体位于血红素基团顶部的对接位点时,才会产生强烈的动力学空穴烧蚀效应。CO从血红素基团迁移会导致带III整体蓝移。因此,带III可作为研究血红素蛋白光解离后配体动力学的灵敏工具。