Nienhaus Karin, Nienhaus G Ulrich
Institute of Biophysics, University of Ulm, 89081 Ulm, Germany.
J Biol Phys. 2007 Dec;33(5-6):357-70. doi: 10.1007/s10867-008-9059-2. Epub 2008 Apr 5.
For many years, myoglobin has served as a paradigm for structure-function studies in proteins. Ligand binding and migration within myoglobin has been studied in great detail by crystallography and spectroscopy, showing that gaseous ligands such as O(2), CO, and NO not only bind to the heme iron but may also reside transiently in three internal ligand docking sites, the primary docking site B and secondary sites C and D. These sites affect ligand association and dissociation in specific ways. Neuroglobin is another vertebrate heme protein that also binds small ligands. Ligand migration pathways in neuroglobin have not yet been elucidated. Here, we have used Fourier transform infrared temperature derivative spectroscopy at cryogenic temperatures to compare the influence of the side chain volume of amino acid residue B10 on ligand migration to and rebinding from docking sites in myoglobin and neuroglobin.
多年来,肌红蛋白一直是蛋白质结构与功能研究的典范。通过晶体学和光谱学对肌红蛋白内的配体结合和迁移进行了深入研究,结果表明,诸如O₂、CO和NO等气态配体不仅与血红素铁结合,还可能短暂地存在于三个内部配体对接位点,即主要对接位点B以及次要位点C和D。这些位点以特定方式影响配体的缔合和解离。神经球蛋白是另一种也能结合小分子配体的脊椎动物血红素蛋白。神经球蛋白中的配体迁移途径尚未阐明。在此,我们利用低温下的傅里叶变换红外温度导数光谱,比较了氨基酸残基B10的侧链体积对肌红蛋白和神经球蛋白中配体迁移至对接位点以及从对接位点重新结合的影响。