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日本家庭中果园草敏感型儿童季节性过敏性鼻炎的全基因组连锁分析。

A genome-wide linkage analysis of orchard grass-sensitive childhood seasonal allergic rhinitis in Japanese families.

作者信息

Yokouchi Y, Shibasaki M, Noguchi E, Nakayama J, Ohtsuki T, Kamioka M, Yamakawa-Kobayashi K, Ito S, Takeda K, Ichikawa K, Nukaga Y, Matsui A, Hamaguchi H, Arinami T

机构信息

Department of Medical Genetics, Institute of Basic Medical Sciences, University of Tsukuba, Tsukuba, Japan.

出版信息

Genes Immun. 2002 Feb;3(1):9-13. doi: 10.1038/sj.gene.6363815.

DOI:10.1038/sj.gene.6363815
PMID:11857054
Abstract

Seasonal allergic rhinitis (SAR) is an inflammatory disease of the nose and eyes that follows sensitization to air-born pollens. We conducted a genome-wide linkage screening of 48 Japanese families (188 members) with orchard grass (OG)-sensitive SAR children (67 affected sib-pairs) in a farming community in central Japan where OG was planted for apple farming and OG pollen is a major cause of SAR. We used the GENEHUNTER program to performed nonparametric multipoint linkage analysis for OG-sensitive SAR as a qualitative trait and for log total serum IgE levels and OG-RAST IgE levels as quantitative traits. Genotyping data of 400 microsatellite markers suggested linkage of SAR to chromosomes 1p36.2, 4q13.3, and 9q34.3 (P < 0.001), linkage of serum total IgE levels to 3p24.1, 5q33.1, 12p13.1, and 12q24.2 (P < 0.001), and linkage of OG-RAST IgE levels to 4p16.1, 11q14.3, and 16p12.3 (P < 0.001). Weak evidence for linkage of SAR to 5q33.1 was also observed (P = 0.01). All these regions, with the exception of 9q34.3, have been previously reported to be linked to asthma and/or atopy. These data suggest that, although loci linked to SAR are likely to be common to asthma, a strong contribution by specific gene(s) to OG-sensitive SAR is unlikely.

摘要

季节性变应性鼻炎(SAR)是一种鼻和眼的炎症性疾病,继发于对空气传播花粉的致敏。我们在日本中部一个种植果园草(OG)用于苹果种植且OG花粉是SAR主要病因的农业社区,对48个日本家庭(188名成员)中对OG敏感的SAR儿童(67对受累同胞对)进行了全基因组连锁筛查。我们使用GENEHUNTER程序对OG敏感的SAR作为定性性状以及对总血清IgE水平和OG-RAST IgE水平作为定量性状进行非参数多点连锁分析。400个微卫星标记的基因分型数据表明,SAR与染色体1p36.2、4q13.3和9q34.3连锁(P < 0.001),血清总IgE水平与3p24.1、5q33.1、12p13.1和12q24.2连锁(P < 0.001),OG-RAST IgE水平与4p16.1、11q14.3和16p12.3连锁(P < 0.001)。还观察到SAR与5q33.1连锁的弱证据(P = 0.01)。除9q34.3外,所有这些区域先前均已报道与哮喘和/或特应性相关。这些数据表明,尽管与SAR连锁的基因座可能与哮喘共有,但特定基因对OG敏感的SAR的强烈贡献不太可能。

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