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鸟嘌呤质子转移互变异构的量子动力学研究及其对大肠杆菌自发点突变的贡献。

A quantum-dynamics study of the prototropic tautomerism of guanine and its contribution to spontaneous point mutations in Escherichia coli.

作者信息

Gorb L, Podolyan Y, Leszczynski J, Siebrand W, Fernández-Ramos A, Smedarchina Z

机构信息

Computational Center for Molecular Structure and Interactions, Department of Chemistry, Jackson State University, Jackson, MS 39217, USA.

出版信息

Biopolymers. 2001;61(1):77-83. doi: 10.1002/1097-0282(2001)61:1<77::AID-BIP10062>3.0.CO;2-W.

Abstract

High-level quantum-chemical and quantum-dynamics calculations are reported on the tautomerization equilibrium and rate constants of guanine and its complexes with one and two water molecules. The results are used to estimate the fraction of guanine present in the cell during DNA synthesis as the unwanted tautomer that forms an irregular base pair with thymine, thus giving rise to a spontaneous GC --> AT point mutation. A comparison of the estimated mutation frequency with the observed frequency in Escherichia coli is used to analyze two proposed mechanisms, differing in the extent of equilibration reached in the tautomerization reaction. In the absence of water, the equilibrium concentration of tautomeric forms is relatively large, but the barrier to their formation is high. If water is present, tautomeric forms are less favored, but water molecules may serve as efficient proton conduits causing rapid tautomerization. It is tentatively concluded that the mechanism in which a high tautomerization barrier keeps the tautomeric transformation far from a state of equilibrium is more likely than a mechanism in which water and/or polymerases produce a low equilibrium concentration of the tautomeric forms.

摘要

报道了关于鸟嘌呤及其与一个和两个水分子形成的配合物的互变异构平衡和速率常数的高级量子化学和量子动力学计算。结果用于估计在DNA合成过程中细胞内鸟嘌呤以与胸腺嘧啶形成不规则碱基对的有害互变异构体形式存在的比例,从而导致自发的GC→AT点突变。将估计的突变频率与大肠杆菌中观察到的频率进行比较,以分析两种提出的机制,这两种机制在互变异构反应中达到的平衡程度上有所不同。在无水情况下,互变异构体形式的平衡浓度相对较大,但形成它们的能垒较高。如果存在水,互变异构体形式不太有利,但水分子可能作为有效的质子传导通道导致快速互变异构。初步得出结论,与水和/或聚合酶产生低平衡浓度的互变异构体形式的机制相比,具有高互变异构能垒使互变异构转变远离平衡状态的机制更有可能。

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