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基于小角散射的溶液中蛋白质相互作用:一种微扰方法。

Interaction of proteins in solution from small-angle scattering: a perturbative approach.

作者信息

Spinozzi Francesco, Gazzillo Domenico, Giacometti Achille, Mariani Paolo, Carsughi Flavio

机构信息

Istituto di Scienze Fisiche, Università di Ancona, and INFM Unità di Ancona, I-60131 Ancona, Italy.

出版信息

Biophys J. 2002 Apr;82(4):2165-75. doi: 10.1016/S0006-3495(02)75563-X.

DOI:10.1016/S0006-3495(02)75563-X
PMID:11916872
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1302010/
Abstract

In this work an improved methodology for studying interactions of proteins in solution by small-angle scattering is presented. Unlike the most common approach, where the protein-protein correlation functions g(ij)(r) are approximated by their zero-density limit (i.e., the Boltzmann factor), we propose a more accurate representation of g(ij)(r) that takes into account terms up to the first order in the density expansion of the mean-force potential. This improvement is expected to be particularly effective in the case of strong protein-protein interactions at intermediate concentrations. The method is applied to analyze small-angle x-ray scattering data obtained as a function of the ionic strength (from 7 to 507 mM) from acidic solutions of beta-lactoglobulin at the fixed concentration of 10 gl(-1). The results are compared with those obtained using the zero-density approximation and show significant improvement, particularly in the more demanding case of low ionic strength.

摘要

在这项工作中,提出了一种通过小角散射研究溶液中蛋白质相互作用的改进方法。与最常见的方法不同,在最常见的方法中,蛋白质-蛋白质相关函数g(ij)(r) 由其零密度极限(即玻尔兹曼因子)近似,我们提出了一种更准确的g(ij)(r) 表示,它考虑了平均力势密度展开中一阶以内的项。预计这种改进在中等浓度下强蛋白质-蛋白质相互作用的情况下特别有效。该方法用于分析在固定浓度10 g l(-1) 下,β-乳球蛋白酸性溶液中作为离子强度(从7到507 mM)函数获得的小角x射线散射数据。将结果与使用零密度近似获得的结果进行比较,结果显示有显著改进,特别是在离子强度较低这种要求更高的情况下。

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Polarizable force fields.可极化力场
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