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打破沉默:异染色质基因抑制是如何被及时阻断的。

Braking the silence: how heterochromatic gene repression is stopped in its tracks.

作者信息

Donze David, Kamakaka Rohinton T

机构信息

Department of Biological Sciences, Louisiana State University, USA.

出版信息

Bioessays. 2002 Apr;24(4):344-9. doi: 10.1002/bies.10072.

DOI:10.1002/bies.10072
PMID:11948620
Abstract

Eukaryotic DNA is assembled into nucleosomes, which are further packaged into higher order chromatin structures containing many non-histone chromosomal proteins. The details of this packaging have profound effects on gene expression and other cellular processes involving the genetic material. Heterochromatic domains of the genome are usually transcriptionally repressed, while euchromatic regions are transcriptionally competent. Current models of gene activation postulate the existence of boundary elements that either prevent inappropriate activation of genes by distal enhancers (enhancer blockers), or sequences that block the propagation of heterochromatin into euchromatic regions (barriers). While numerous boundary sequences have been identified, little is known with regard to the molecular mechanisms used to punctuate the genome. This review will focus on recent data that provide insight into the mode of action of barrier elements.

摘要

真核生物的DNA组装成核小体,核小体进一步包装成包含许多非组蛋白染色体蛋白的高级染色质结构。这种包装的细节对基因表达和涉及遗传物质的其他细胞过程具有深远影响。基因组的异染色质结构域通常转录受抑制,而常染色质区域具有转录活性。当前的基因激活模型假定存在边界元件,这些边界元件要么阻止远端增强子对基因的不适当激活(增强子阻断剂),要么阻止异染色质向常染色质区域的传播(屏障)。虽然已经鉴定出许多边界序列,但对于用于划分基因组的分子机制知之甚少。本综述将聚焦于提供对屏障元件作用模式深入了解的最新数据。

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Nucleic Acids Res. 2019 Jun 4;47(10):5181-5192. doi: 10.1093/nar/gkz209.
2
Expanding heterochromatin reveals discrete subtelomeric domains delimited by chromatin landscape transitions.扩展异染色质揭示了由染色质景观转变界定的离散端粒域。
Genome Res. 2018 Dec;28(12):1867-1881. doi: 10.1101/gr.236554.118. Epub 2018 Oct 24.
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Ectopically tethered CP190 induces large-scale chromatin decondensation.
异位拴系的CP190会诱导大规模染色质解聚。
Sci Rep. 2014 Jan 29;4:3917. doi: 10.1038/srep03917.
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A computational model for histone mark propagation reproduces the distribution of heterochromatin in different human cell types.一种组蛋白标记传播的计算模型再现了不同人类细胞类型中异染色质的分布。
PLoS One. 2013 Sep 19;8(9):e73818. doi: 10.1371/journal.pone.0073818. eCollection 2013.
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The SUMO E3 ligase Siz2 exerts a locus-dependent effect on gene silencing in Saccharomyces cerevisiae.SUMO E3连接酶Siz2对酿酒酵母中的基因沉默发挥基因座依赖性作用。
Eukaryot Cell. 2012 Apr;11(4):452-62. doi: 10.1128/EC.05243-11. Epub 2012 Feb 17.
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A single heterochromatin boundary element imposes position-independent antisilencing activity in Saccharomyces cerevisiae minichromosomes.单个异染色质边界元件在酿酒酵母小染色体中赋予位置无关的抗沉默活性。
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Genome-wide prediction and analysis of human chromatin boundary elements.全基因组预测和分析人类染色质边界元件。
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The nuclear pore complex: bridging nuclear transport and gene regulation.核孔复合体:连接核运输和基因调控。
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The impact of local genome sequence on defining heterochromatin domains.局部基因组序列对定义异染色质结构域的影响。
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