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通过快速浸泡法生成同晶型重原子衍生物。第一部分:测试案例。

Generating isomorphous heavy-atom derivatives by a quick-soak method. Part I: test cases.

作者信息

Sun Peter D, Radaev Sergei, Kattah Michael

机构信息

Structural Biology Section, Laboratory of Immunogenetics, National Institute of Allergy and Infectious Diseases, National Institutes of Health, 12441 Parklawn Drive, Rockville, MD 20852, USA.

出版信息

Acta Crystallogr D Biol Crystallogr. 2002 Jul;58(Pt 7):1092-8. doi: 10.1107/s0907444902006510. Epub 2002 Jun 20.

Abstract

Screening for heavy-atom derivatives remains a time-consuming and cumbersome process that often results in non-isomorphous derivatives whose phases cannot be combined. Using lysozyme and FcgammaRIII receptor crystals as test cases, an improved soaking method for the generation of conventional heavy-atom derivatives has been developed. The method is based on soaking crystals in heavy-atom compounds for a very brief time at near-saturation concentrations. Compared with the current heavy-atom soaking method, which often takes days to achieve a derivatization, the quick-soak method completes a derivatization within 10 min to 2 h. The bound heavy-atom sites display higher peak heights from quick soaks than from overnight soaks in all cases tested. The quick-soak derivatives also preserved native-like diffraction resolution and data quality that was better than the prolonged-soak derivatives. Furthermore, derivatives generated by brief soaks are more isomorphous to the native than those generated by overnight soaks. Short soaks not only increase the likelihood of success in heavy-atom screening by reducing the pitfalls associated with prolonged soaks, such as lack of isomorphism and overall lattice disorder, but also have the potential to transform a time-consuming derivative screening into an 'on-the-fly' real-time derivatization process.

摘要

筛选重原子衍生物仍然是一个耗时且繁琐的过程,该过程常常会产生非同晶型衍生物,其相位无法合并。以溶菌酶和FcγRIII受体晶体作为测试案例,已开发出一种用于生成传统重原子衍生物的改进浸泡方法。该方法基于将晶体在接近饱和浓度的重原子化合物中浸泡极短时间。与当前通常需要数天才能实现衍生化的重原子浸泡方法相比,快速浸泡法在10分钟至2小时内即可完成衍生化。在所有测试案例中,快速浸泡法得到的结合重原子位点的峰高均高于过夜浸泡法。快速浸泡法得到的衍生物还保留了类似天然的衍射分辨率和数据质量,优于长时间浸泡法得到的衍生物。此外,短时间浸泡法得到的衍生物比过夜浸泡法得到的衍生物与天然晶体更同晶型。短时间浸泡不仅通过减少与长时间浸泡相关的问题(如缺乏同晶型和整体晶格无序)来增加重原子筛选成功的可能性,而且还有可能将耗时的衍生物筛选转变为“即时”实时衍生化过程。

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