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一类用于获得高相位能力重原子衍生物的新型钆配合物:来自用鸡蛋白溶菌酶和黄曲霉尿酸氧化酶进行的单波长反常散射实验的结果。

A new class of gadolinium complexes employed to obtain high-phasing-power heavy-atom derivatives: results from SAD experiments with hen egg-white lysozyme and urate oxidase from Aspergillus flavus.

作者信息

Girard E, Stelter M, Anelli P L, Vicat J, Kahn R

机构信息

Laboratoire de Cristallographie Macromoléculaire, Institut de Biologie Structurale J.-P. Ebel CEA-CNRS-UJF, 41 Rue Jules Horowitz, 38027 Grenoble CEDEX 1, France.

出版信息

Acta Crystallogr D Biol Crystallogr. 2003 Jan;59(Pt 1):118-26. doi: 10.1107/s0907444902020176. Epub 2002 Dec 19.

DOI:10.1107/s0907444902020176
PMID:12499547
Abstract

Seven gadolinium complexes are shown to be excellent compounds for the preparation of heavy-atom derivatives for macromolecular crystallography projects. De novo phasing has been carried out using single-wavelength anomalous diffraction (SAD) on a series of gadolinium-derivative crystals of two proteins: hen egg-white lysozyme and urate oxidase from Aspergillus flavus. Lysozyme derivative crystals were obtained by co-crystallizing the protein with the corresponding gadolinium complex at a concentration of 100 mM. Diffraction data were collected to a resolution of 1.7 A using Cu K(alpha) radiation from a rotating-anode generator, making use of the high anomalous signal of gadolinium at this wavelength. Urate oxidase derivative crystals were obtained by soaking native crystals in 100 mM gadolinium complex solutions. Diffraction data were collected to a resolution close to 3 A using X-rays at the Gd L(III) absorption edge, taking advantage of the sharp white line on that edge. For all urate oxidase derivative crystals and three of the lysozyme crystals, SAD phasing led to electron-density maps of very high quality, allowing unambiguous chain tracing. From this study, the binding effectiveness of the gadolinium complexes seems to be related to the nature of the precipitant used for crystallization. These gadolinium complexes represent a new class of high-phasing-power heavy-atom derivatives that may be used for high-throughput structure-determination projects.

摘要

七种钆配合物被证明是用于大分子晶体学项目制备重原子衍生物的优异化合物。利用单波长反常衍射(SAD)对两种蛋白质(鸡蛋清溶菌酶和黄曲霉尿酸氧化酶)的一系列钆衍生物晶体进行了从头相位测定。溶菌酶衍生物晶体是通过将蛋白质与浓度为100 mM的相应钆配合物共结晶获得的。使用旋转阳极发生器产生的Cu K(α)辐射收集衍射数据,分辨率达到1.7 Å,利用了该波长下钆的高反常信号。尿酸氧化酶衍生物晶体是通过将天然晶体浸泡在100 mM钆配合物溶液中获得的。利用该吸收边上的尖锐白线,在钆的L(III)吸收边使用X射线收集衍射数据,分辨率接近3 Å。对于所有尿酸氧化酶衍生物晶体和三种溶菌酶晶体,SAD相位测定产生了高质量的电子密度图,允许进行明确的链追踪。从这项研究来看,钆配合物的结合效果似乎与用于结晶的沉淀剂的性质有关。这些钆配合物代表了一类新的高相位能力的重原子衍生物,可用于高通量结构测定项目。

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