• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

估算原核生物多样性及其限度。

Estimating prokaryotic diversity and its limits.

作者信息

Curtis Thomas P, Sloan William T, Scannell Jack W

机构信息

Department of Civil Engineering, Centre for Molecular Ecology, University of Newcastle upon Tyne, Newcastle upon Tyne NE1 7RU, United Kingdom.

出版信息

Proc Natl Acad Sci U S A. 2002 Aug 6;99(16):10494-9. doi: 10.1073/pnas.142680199. Epub 2002 Jul 3.

DOI:10.1073/pnas.142680199
PMID:12097644
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC124953/
Abstract

The absolute diversity of prokaryotes is widely held to be unknown and unknowable at any scale in any environment. However, it is not necessary to count every species in a community to estimate the number of different taxa therein. It is sufficient to estimate the area under the species abundance curve for that environment. Log-normal species abundance curves are thought to characterize communities, such as bacteria, which exhibit highly dynamic and random growth. Thus, we are able to show that the diversity of prokaryotic communities may be related to the ratio of two measurable variables: the total number of individuals in the community and the abundance of the most abundant members of that community. We assume that either the least abundant species has an abundance of 1 or Preston's canonical hypothesis is valid. Consequently, we can estimate the bacterial diversity on a small scale (oceans 160 per ml; soil 6,400-38,000 per g; sewage works 70 per ml). We are also able to speculate about diversity at a larger scale, thus the entire bacterial diversity of the sea may be unlikely to exceed 2 x 10(6), while a ton of soil could contain 4 x 10(6) different taxa. These are preliminary estimates that may change as we gain a greater understanding of the nature of prokaryotic species abundance curves. Nevertheless, it is evident that local and global prokaryotic diversity can be understood through species abundance curves and purely experimental approaches to solving this conundrum will be fruitless.

摘要

人们普遍认为,原核生物的绝对多样性在任何环境中的任何尺度下都是未知且不可知的。然而,要估算一个群落中不同分类单元的数量,并不需要统计其中的每一个物种。对于该环境,估算物种丰度曲线下的面积就足够了。对数正态物种丰度曲线被认为是群落(如细菌群落)的特征,这类群落呈现出高度动态和随机的生长特性。因此,我们能够表明原核生物群落的多样性可能与两个可测量变量的比率有关:群落中的个体总数以及该群落中最丰富成员的丰度。我们假设最不丰富的物种丰度为1,或者普雷斯顿的标准假说是有效的。由此,我们可以在小尺度上估算细菌多样性(海洋中每毫升160种;土壤中每克6400 - 38000种;污水处理厂中每毫升70种)。我们还能够推测更大尺度上的多样性,因此海洋中细菌的整体多样性可能不会超过2×10⁶种,而一吨土壤可能包含4×10⁶种不同的分类单元。这些都是初步估计,随着我们对原核生物物种丰度曲线本质的进一步了解,可能会有所变化。然而,很明显,通过物种丰度曲线可以理解局部和全球的原核生物多样性,而单纯通过实验方法来解决这个难题将是徒劳的。

相似文献

1
Estimating prokaryotic diversity and its limits.估算原核生物多样性及其限度。
Proc Natl Acad Sci U S A. 2002 Aug 6;99(16):10494-9. doi: 10.1073/pnas.142680199. Epub 2002 Jul 3.
2
How many species of prokaryotes are there?原核生物有多少种?
Proc Natl Acad Sci U S A. 2002 Aug 6;99(16):10234-6. doi: 10.1073/pnas.162359199. Epub 2002 Jul 30.
3
Ecology of the rare microbial biosphere of the Arctic Ocean.北极海洋稀有微生物生物圈的生态学。
Proc Natl Acad Sci U S A. 2009 Dec 29;106(52):22427-32. doi: 10.1073/pnas.0908284106. Epub 2009 Dec 17.
4
Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance.将 16S 基因拷贝数信息纳入其中可以提高对微生物多样性和丰度的估计。
PLoS Comput Biol. 2012;8(10):e1002743. doi: 10.1371/journal.pcbi.1002743. Epub 2012 Oct 25.
5
Comparison of Prokaryotic Diversity in Cold, Oligotrophic Remote Lakes of Chilean Patagonia.智利巴塔哥尼亚寒冷、贫营养偏远湖泊中细菌多样性的比较
Curr Microbiol. 2017 May;74(5):598-613. doi: 10.1007/s00284-017-1209-y. Epub 2017 Mar 7.
6
Phylogenetic and Functional Diversity of Total (DNA) and Expressed (RNA) Bacterial Communities in Urban Green Infrastructure Bioswale Soils.城市绿色基础设施生物滞留带土壤中总(DNA)细菌群落和表达(RNA)细菌群落的系统发育与功能多样性
Appl Environ Microbiol. 2017 Aug 1;83(16). doi: 10.1128/AEM.00287-17. Print 2017 Aug 15.
7
Plant Community and Nitrogen Deposition as Drivers of Alpha and Beta Diversities of Prokaryotes in Reconstructed Oil Sand Soils and Natural Boreal Forest Soils.植物群落和氮沉降作为重构油砂土壤和天然北方森林土壤中原核生物α多样性和β多样性的驱动因素
Appl Environ Microbiol. 2017 Apr 17;83(9). doi: 10.1128/AEM.03319-16. Print 2017 May 1.
8
[Number, viability, and diversity of the filterable forms of prokaryotes in sphagnous high-moor peat].[水藓高位沼泽泥炭中原核生物可滤过形态的数量、生存能力及多样性]
Izv Akad Nauk Ser Biol. 2014 May-Jun(3):241-5.
9
Soil bacterial community structure in five tropical forests in Malaysia and one temperate forest in Japan revealed by pyrosequencing analyses of 16S rRNA gene sequence variation.通过对16S rRNA基因序列变异进行焦磷酸测序分析揭示马来西亚五个热带森林和日本一个温带森林中的土壤细菌群落结构。
Genes Genet Syst. 2013;88(2):93-103. doi: 10.1266/ggs.88.93.
10
Abundance, depth distribution, and composition of aerobic bacteriochlorophyll a-producing bacteria in four basins of the central Baltic Sea.波罗的海中部四个盆地中产好氧细菌叶绿素a的细菌的丰度、深度分布和组成。
Appl Environ Microbiol. 2008 Jul;74(14):4398-404. doi: 10.1128/AEM.02447-07. Epub 2008 May 23.

引用本文的文献

1
Bringing the uncultivated microbial majority of freshwater ecosystems into culture.将淡水生态系统中未培养的大多数微生物培养出来。
Nat Commun. 2025 Aug 26;16(1):7971. doi: 10.1038/s41467-025-63266-9.
2
Different Land Use Systems in the Brazilian Cerrado and Their Effects on Soil Bacterial Communities.巴西塞拉多不同土地利用系统及其对土壤细菌群落的影响。
Microorganisms. 2025 Apr 1;13(4):804. doi: 10.3390/microorganisms13040804.
3
Resuscitation-promoting factor (Rpf) terminates dormancy among diverse soil bacteria.复苏促进因子(Rpf)可终止多种土壤细菌的休眠状态。
mSystems. 2025 May 20;10(5):e0151724. doi: 10.1128/msystems.01517-24. Epub 2025 Apr 16.
4
Recovery of 679 metagenome-assembled genomes from different soil depths along a precipitation gradient.从沿降水梯度的不同土壤深度中恢复679个宏基因组组装基因组。
Sci Data. 2025 Mar 28;12(1):521. doi: 10.1038/s41597-025-04884-2.
5
MeSS and assembly_finder: a toolkit for in silico metagenomic sample generation.MeSS和assembly_finder:一个用于计算机模拟宏基因组样本生成的工具包。
Bioinformatics. 2024 Dec 26;41(1). doi: 10.1093/bioinformatics/btae760.
6
The community background alters the evolution of thermal performance.群落背景会改变热性能的演变。
Evol Lett. 2024 Mar 16;8(4):505-513. doi: 10.1093/evlett/qrae007. eCollection 2024 Aug.
7
Comparative microbiome diversity in root-nodules of three species used in push-pull cropping system.推拉种植系统中使用的三种植物根瘤中的微生物群落多样性比较
Front Microbiol. 2024 Jun 20;15:1395811. doi: 10.3389/fmicb.2024.1395811. eCollection 2024.
8
AD13-4 Enhances Saline-Alkali Stress Tolerance of Alfalfa and Affects Composition of Rhizosphere Soil Microbial Community.AD13-4 增强紫花苜蓿的盐碱性胁迫耐受性并影响根际土壤微生物群落组成。
Int J Mol Sci. 2024 May 26;25(11):5785. doi: 10.3390/ijms25115785.
9
Microbial divergence and evolution. The case of anammox bacteria.微生物的分化与进化。厌氧氨氧化菌的实例。
Front Microbiol. 2024 Feb 13;15:1355780. doi: 10.3389/fmicb.2024.1355780. eCollection 2024.
10
Challenges and Approaches of Culturing the Unculturable Archaea.培养不可培养古菌的挑战与方法
Biology (Basel). 2023 Dec 7;12(12):1499. doi: 10.3390/biology12121499.

本文引用的文献

1
Minimal Community Structure: An Explanation of Species Abundance Patterns.最小群落结构:物种丰富度模式的一种解释
Am Nat. 1980;116(6):770-787. doi: 10.1086/283669.
2
The unified neutral theory of biodiversity and biogeography at age ten.生物多样性和生物地理学的统一中性理论十岁了。
Trends Ecol Evol. 2011 Jul;26(7):340-8. doi: 10.1016/j.tree.2011.03.024. Epub 2011 May 10.
3
Diversity of planktonic foraminifera in deep-sea sediments.深海沉积物中浮游有孔虫的多样性。
Science. 1970 Jun 12;168(3937):1345-7. doi: 10.1126/science.168.3937.1345.
4
Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil.荧光假单胞菌菌株在土壤中的生物地理学及特有性程度
Appl Environ Microbiol. 2000 Dec;66(12):5448-56. doi: 10.1128/AEM.66.12.5448-5456.2000.
5
Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys.基于比较16S rRNA和amoA序列分析的所有已确认氨氧化菌物种的系统发育:对分子多样性调查的启示
Appl Environ Microbiol. 2000 Dec;66(12):5368-82. doi: 10.1128/AEM.66.12.5368-5382.2000.
6
The emergence and maintenance of diversity: insights from experimental bacterial populations.
Trends Ecol Evol. 2000 Jun;15(6):243-247. doi: 10.1016/s0169-5347(00)01871-1.
7
Diversity and distribution of DNA sequences with affinity to ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in the Arctic Ocean.北冰洋中与变形菌纲β亚类氨氧化细菌具有亲和性的DNA序列的多样性与分布
Appl Environ Microbiol. 2000 May;66(5):1960-9. doi: 10.1128/AEM.66.5.1960-1969.2000.
8
A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces.少数世界性的系统发育型在差异极大的海洋区域中主导着浮游古菌群落。
Appl Environ Microbiol. 2000 May;66(5):1777-87. doi: 10.1128/AEM.66.5.1777-1787.2000.
9
How stable is stable? Function versus community composition.多稳定才算稳定?功能与群落组成。
Appl Environ Microbiol. 1999 Aug;65(8):3697-704. doi: 10.1128/AEM.65.8.3697-3704.1999.
10
Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils.天然土壤、耕作土壤和演替土壤中氨氧化菌16S rRNA基因序列的比较多样性
Appl Environ Microbiol. 1999 Jul;65(7):2994-3000. doi: 10.1128/AEM.65.7.2994-3000.1999.