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昆虫飞行肌断层扫描图中平均强直横桥的分子建模。

Molecular modeling of averaged rigor crossbridges from tomograms of insect flight muscle.

作者信息

Chen Li Fan, Winkler Hanspeter, Reedy Michael K, Reedy Mary C, Taylor Kenneth A

机构信息

Institute of Molecular Biophysics, Florida State University, Tallahassee, FL 32306-4380, USA.

出版信息

J Struct Biol. 2002 Apr-May;138(1-2):92-104. doi: 10.1016/s1047-8477(02)00013-8.

Abstract

Electron tomography, correspondence analysis, molecular model building, and real-space refinement provide detailed 3-D structures for in situ myosin crossbridges in the nucleotide-free state (rigor), thought to represent the end of the power stroke. Unaveraged tomograms from a 25-nm longitudinal section of insect flight muscle preserved native structural variation. Recurring crossbridge motifs that repeat every 38.7 nm along the actin filament were extracted from the tomogram and classified by correspondence analysis into 25 class averages, which improved the signal to noise ratio. Models based on the atomic structures of actin and of myosin subfragment 1 were rebuilt to fit 11 class averages. A real-space refinement procedure was applied to quantitatively fit the reconstructions and to minimize steric clashes between domains introduced during the fitting. These combined procedures show that no single myosin head structure can fit all the in situ crossbridges. The validity of the approach is supported by agreement of these atomic models with fluorescent probe data from vertebrate muscle as well as with data from regulatory light chain crosslinking between heads of smooth muscle heavy meromyosin when bound to actin.

摘要

电子断层扫描、对应分析、分子模型构建和实空间精修,为处于无核苷酸状态(僵直状态)的原位肌球蛋白横桥提供了详细的三维结构,这种状态被认为代表了动力冲程的末期。从昆虫飞行肌25纳米纵向切片获得的未平均化断层图像保留了天然结构变异。沿着肌动蛋白丝每38.7纳米重复出现的横桥基序,从断层图像中提取出来,并通过对应分析归类为25个类平均图像,这提高了信噪比。基于肌动蛋白和肌球蛋白亚片段1的原子结构重建模型,以匹配11个类平均图像。应用实空间精修程序来定量拟合重建结构,并尽量减少拟合过程中引入的结构域之间的空间冲突。这些综合程序表明,没有单一的肌球蛋白头部结构能够拟合所有原位横桥。这些原子模型与来自脊椎动物肌肉的荧光探针数据以及与结合肌动蛋白时平滑肌重酶解肌球蛋白头部之间的调节性轻链交联数据一致,从而支持了该方法的有效性。

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