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组蛋白:促进还是对抗DNA压缩?

HU: promoting or counteracting DNA compaction?

作者信息

Dame Remus Thei, Goosen Nora

机构信息

Laboratory of Molecular Genetics, Gorlaeus Laboratories, Leiden Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA, Leiden, The Netherlands.

出版信息

FEBS Lett. 2002 Oct 9;529(2-3):151-6. doi: 10.1016/s0014-5793(02)03363-x.

DOI:10.1016/s0014-5793(02)03363-x
PMID:12372591
Abstract

The role of HU in Escherichia coli as both a protein involved in DNA compaction and as a protein with regulatory function seems to be firmly established. However, a critical look at the available data reveals that this is not true for each of the proposed roles of this protein. The role of HU as a regulatory or accessory protein in a number of systems has been thoroughly investigated and in many cases has been largely elucidated. However, almost 30 years after its discovery, convincing evidence for the proposed role of HU in DNA compaction is still lacking. Here we present an extensive literature survey of the available data which, in combination with novel microscopic insights, suggests that the role of HU could be the opposite as well. The protein is likely to play an architectural role, but instead of being responsible for DNA compaction it could be involved in antagonising compaction by other proteins such as H-NS.

摘要

HU在大肠杆菌中作为一种参与DNA压缩的蛋白质以及具有调节功能的蛋白质,其作用似乎已得到确凿证实。然而,仔细审视现有数据会发现,对于该蛋白质所提出的每种作用并非都如此。HU作为多种系统中的调节或辅助蛋白质的作用已得到深入研究,在许多情况下也已基本阐明。然而,在其发现近30年后,仍缺乏关于HU在DNA压缩中所提出作用的令人信服的证据。在此,我们对现有数据进行了广泛的文献综述,并结合新的微观见解,表明HU的作用也可能相反。该蛋白质可能发挥一种结构作用,但不是负责DNA压缩,而是可能参与对抗其他蛋白质(如H-NS)引起的压缩。

相似文献

1
HU: promoting or counteracting DNA compaction?组蛋白:促进还是对抗DNA压缩?
FEBS Lett. 2002 Oct 9;529(2-3):151-6. doi: 10.1016/s0014-5793(02)03363-x.
2
Dual architectural roles of HU: formation of flexible hinges and rigid filaments.HU的双重结构作用:形成柔性铰链和刚性细丝。
Proc Natl Acad Sci U S A. 2004 May 4;101(18):6969-74. doi: 10.1073/pnas.0308230101. Epub 2004 Apr 26.
3
Heat shock-induced excessive relaxation of DNA in Escherichia coli mutants lacking the histone-like protein HU.热休克诱导缺乏类组蛋白HU的大肠杆菌突变体中DNA过度松弛。
Biochim Biophys Acta. 1997 Sep 12;1353(3):298-306. doi: 10.1016/s0167-4781(97)00105-x.
4
H-NS mediated compaction of DNA visualised by atomic force microscopy.通过原子力显微镜观察到的H-NS介导的DNA压缩。
Nucleic Acids Res. 2000 Sep 15;28(18):3504-10. doi: 10.1093/nar/28.18.3504.
5
Modulation of DNA conformations through the formation of alternative high-order HU-DNA complexes.通过形成替代性高阶HU-DNA复合物对DNA构象进行调控。
J Mol Biol. 2004 Aug 6;341(2):419-28. doi: 10.1016/j.jmb.2004.06.023.
6
The architectural role of nucleoid-associated proteins in the organization of bacterial chromatin: a molecular perspective.类核相关蛋白在细菌染色质组织中的结构作用:分子视角
J Struct Biol. 2006 Nov;156(2):262-72. doi: 10.1016/j.jsb.2006.05.006. Epub 2006 Jun 3.
7
Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli.类核蛋白对大肠杆菌中DNA抑制环形成的影响。
Nucleic Acids Res. 2007;35(12):3988-4000. doi: 10.1093/nar/gkm419. Epub 2007 Jun 6.
8
Variation in HU composition during growth of Escherichia coli: the heterodimer is required for long term survival.大肠杆菌生长过程中HU组成的变化:异二聚体是长期存活所必需的。
J Mol Biol. 1997 Oct 17;273(1):93-104. doi: 10.1006/jmbi.1997.1310.
9
Histone-like protein HU and bacterial DNA topology: suppression of an HU deficiency by gyrase mutations.类组蛋白HU与细菌DNA拓扑结构:通过gyrase突变抑制HU缺陷
J Mol Biol. 1996 Feb 16;256(1):66-76. doi: 10.1006/jmbi.1996.0068.
10
Some properties of HU are modified after the infection of Escherichia coli by bacteriophage T4.在噬菌体T4感染大肠杆菌后,HU的一些特性会发生改变。
J Bacteriol. 1994 Mar;176(6):1578-85. doi: 10.1128/jb.176.6.1578-1585.1994.

引用本文的文献

1
Bacterial biofilm-derived H-NS protein acts as a defense against Neutrophil Extracellular Traps (NETs).细菌生物膜衍生的H-NS蛋白可作为抵御中性粒细胞胞外诱捕网(NETs)的防御机制。
NPJ Biofilms Microbiomes. 2025 Apr 15;11(1):58. doi: 10.1038/s41522-025-00691-0.
2
Amyloid-like DNA bridging: a new mode of DNA shaping.淀粉样DNA桥接:一种新的DNA塑形模式。
Nucleic Acids Res. 2025 Feb 27;53(5). doi: 10.1093/nar/gkaf169.
3
Bacterial nucleoid is a riddle wrapped in a mystery inside an enigma.细菌拟核是一个谜团,被包裹在一个谜中,又被包含在另一个谜里。
J Bacteriol. 2024 Mar 21;206(3):e0021123. doi: 10.1128/jb.00211-23. Epub 2024 Feb 15.
4
Dynamic action of an intrinsically disordered protein in DNA compaction that induces mycobacterial dormancy.一种固有无序蛋白在 DNA 紧缩中的动态作用,诱导分枝杆菌休眠。
Nucleic Acids Res. 2024 Jan 25;52(2):816-830. doi: 10.1093/nar/gkad1149.
5
Acetylation at Lysine 86 of HUβ Modulates the DNA-Binding Capability of the Protein.HUβ赖氨酸86位的乙酰化修饰调节该蛋白的DNA结合能力。
Front Microbiol. 2022 Feb 4;12:809030. doi: 10.3389/fmicb.2021.809030. eCollection 2021.
6
Interaction of the HU Protein with Various Topological Forms of DNA.HU 蛋白与各种拓扑构象 DNA 的相互作用。
Biomolecules. 2021 Nov 19;11(11):1724. doi: 10.3390/biom11111724.
7
Direct visualization of the effect of DNA structure and ionic conditions on HU-DNA interactions.直接观察 DNA 结构和离子条件对 HU-DNA 相互作用的影响。
Sci Rep. 2021 Sep 16;11(1):18492. doi: 10.1038/s41598-021-97763-w.
8
Direct monitoring of the stepwise condensation of kinetoplast DNA networks.直接监测基体 DNA 网络的逐步缩合。
Sci Rep. 2021 Jan 15;11(1):1501. doi: 10.1038/s41598-021-81045-6.
9
Effect of Different Crowding Agents on the Architectural Properties of the Bacterial Nucleoid-Associated Protein HU.不同拥挤剂对细菌核相关蛋白 HU 的结构特性的影响。
Int J Mol Sci. 2020 Dec 15;21(24):9553. doi: 10.3390/ijms21249553.
10
Consensus protein engineering on the thermostable histone-like bacterial protein HUs significantly improves stability and DNA binding affinity.对热稳定菌源组蛋白样蛋白 HU 的共识蛋白工程改造极大地提高了其稳定性和 DNA 结合亲和力。
Extremophiles. 2020 Mar;24(2):293-306. doi: 10.1007/s00792-020-01154-4. Epub 2020 Jan 24.