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茶渍目和星裂盘菌目(子囊菌门,真菌)的系统发育:基于核糖体RNA小亚基和大亚基的目间及目内关系

Phylogeny of the Gyalectales and Ostropales (Ascomycota, Fungi): among and within order relationships based on nuclear ribosomal RNA small and large subunits.

作者信息

Kauff Frank, Lutzoni François

机构信息

Abteilung Allgemeine Botanik, Fachbereich Biologie, Universität Kaiserslautern, Postfach 3049, 67653 Kaiserslautern, Germany.

出版信息

Mol Phylogenet Evol. 2002 Oct;25(1):138-56. doi: 10.1016/s1055-7903(02)00214-2.

DOI:10.1016/s1055-7903(02)00214-2
PMID:12383757
Abstract

Despite various morphological and anatomical similarities, the two orders Gyalectales (lichenized ascomycetes) and Ostropales (lichenized and non-lichenized ascomycetes) have been considered to be distantly related to each other and their position within the Ascomycota was unsettled. To estimate relationships within these groups and their respective phylogenenetic placement within the Ascomycota, we analyzed DNA sequences from the nuclear small and large subunit ribosomal RNA genes using Maximum Parsimony, Maximum Likelihood, and Bayesian statistics with Markov chain Monte Carlo algorithms. Support for internal branches estimated with bootstrap was compared to Bayesian posterior probabilities. We report here that the Ostropales, in their current circumscription, are paraphyletic, and that the Ostropales s.l. include the Gyalectales and Trapeliaceae. The Unitunicate Ascohymenials are redelineated to include the Ostropales s.l., as defined here, and the Baeomycetaceae. Dimerella and Coenogonium are congeneric, and Petractis thelotremella and P. hypoleuca are reunited with members of the genus Gyalecta. In addition to requiring less computational time, Bayesian inference of phylogeny recovered the same topology as a conventional heuristic search using Maximum Likelihood as the optimization criterion and seems superior to bootstrapping in estimating support for short internal branches.

摘要

尽管胶盘衣目(地衣化子囊菌)和星裂盘菌目(地衣化和非地衣化子囊菌)在形态和解剖学上存在各种相似之处,但它们一直被认为彼此关系较远,且它们在子囊菌门中的位置尚未确定。为了估计这些类群内部的关系以及它们在子囊菌门中各自的系统发育位置,我们使用最大简约法、最大似然法以及带有马尔可夫链蒙特卡罗算法的贝叶斯统计方法,分析了来自核小亚基和大亚基核糖体RNA基因的DNA序列。将通过自展法估计的内部分支支持率与贝叶斯后验概率进行了比较。我们在此报告,当前界定的星裂盘菌目是并系的,并且广义的星裂盘菌目包括胶盘衣目和斑衣科。单囊壁子囊层菌纲被重新划定,以包括在此定义的广义星裂盘菌目和皱盘衣科。双盘菌属和共囊菌属是同属,而拟盘多毛孢属的盘多毛孢和浅色盘多毛孢与胶盘衣属的成员重新合并。除了需要更少的计算时间外,系统发育的贝叶斯推断恢复了与使用最大似然法作为优化标准的传统启发式搜索相同的拓扑结构,并且在估计短内部分支的支持率方面似乎优于自展法。

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